RNA id: TU16677


Basic Information

Item Value
RNA id TU16677
length 204
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G12484
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 46164192 ~ 46164395 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttacagatagagtaggtctagaccacactctataaattccaaaaccccaacaattacagtaattccctcaagagcaagcattagcagtggctattgcgacagtggcgaggaaaaactcccttttaggaagaaacctcggcagacccagactcttggtaggcggtgtctgacggggccggttgggggtgtgatgaacagtggcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16624 lncRNA upstream 111961 46051857 ~ 46052231 (+) True G12445
TU16611 lncRNA upstream 145162 46016372 ~ 46019030 (+) True G12435
TU16572 lncRNA upstream 199946 45960315 ~ 45964246 (+) True G12410
TU16567 lncRNA upstream 225638 45935249 ~ 45938554 (+) False G12406
TU16568 lncRNA upstream 225638 45935249 ~ 45938554 (+) True G12406
TU16678 lncRNA downstream 1135 46165530 ~ 46165748 (+) True G12485
TU16724 lncRNA downstream 104417 46268812 ~ 46269026 (+) True G12522
XR_005639011.1 lncRNA downstream 118653 46283048 ~ 46285479 (+) True LOC120557712
TU16741 lncRNA downstream 126346 46290741 ~ 46291068 (+) True G12537
TU16768 lncRNA downstream 308283 46472678 ~ 46472913 (+) True G12559
XM_039809380.1 mRNA upstream 62865 46080099 ~ 46101327 (+) True gstt1b
XM_039809414.1 mRNA upstream 85173 46068792 ~ 46079019 (+) True ddt
XM_039809348.1 mRNA upstream 98623 46057091 ~ 46065569 (+) True chchd10
XM_039809255.1 mRNA upstream 254402 45869403 ~ 45909790 (+) True p2rx3b
XM_039809149.1 mRNA upstream 472841 45681248 ~ 45691351 (+) True tmx2b
XM_039798275.1 mRNA downstream 153981 46318376 ~ 46337333 (+) True LOC120557716
XM_039805647.1 mRNA downstream 182575 46346970 ~ 46373840 (+) True LOC120562127
XM_039815239.1 mRNA downstream 228451 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039808768.1 mRNA downstream 681622 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA downstream 681622 46846017 ~ 47125487 (+) False LOC120564084
TU16442 other upstream 518219 45638080 ~ 45645973 (+) True G12311
TU16051 other upstream 2796345 43361536 ~ 43367847 (+) True G11976
TU15940 other upstream 3076271 43086020 ~ 43087921 (+) False G11897
unassigned_transcript_69 other downstream 87 46164482 ~ 46164553 (+) True trnae-cuc
TU16690 other downstream 2010 46166405 ~ 46169689 (+) True G12491
unassigned_transcript_71 other downstream 42537 46206932 ~ 46207004 (+) True trnat-ugu
unassigned_transcript_72 other downstream 43258 46207653 ~ 46207725 (+) True trnak-uuu_1
TU16762 other downstream 252033 46416428 ~ 46417773 (+) True G12553

Expression Profile