RNA id: XR_005639011.1


Basic Information

Item Value
RNA id XR_005639011.1
length 497
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC120557712
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 46283048 ~ 46285479 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAATACAGGCCAGGCATAGAGCTGGGAGTAGATGAGACGCTCTCCTTGGTTGTTCGGGGCCATCATCCAATGCAGAGCGCAGAATCCGGACCTTGGAGACATTCTCATCATTGACGGGCAGTGGTTCAGCTACATCTGTCAGTGGTTGGGCTTCACCTACATAACAGAACAGacatggacaGGACAACATCATATCTCAACAACCACAGATGACCCATCTTGATCTATCGACCCCACCAACAGAACCTGGCCAAGAAAGCCCCAAAACTTCTGCTCTTCCTCCCATATGctgctactgttttttttaaaatttattttctattattcTTAAATTTGCTATGAACCTTTGACCCGACACTCATATTGCACTGCCTTTTGCTACTTGTccctttgtttatttatattatgtctAGTAATGTCATCCACTTGCACTGATACACTATATTAATACAGTGTACATGCTGTCTGCAATGTTAATAAATAACTGCTTCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16724 lncRNA upstream 14022 46268812 ~ 46269026 (+) True G12522
TU16678 lncRNA upstream 117300 46165530 ~ 46165748 (+) True G12485
TU16677 lncRNA upstream 118653 46164192 ~ 46164395 (+) True G12484
TU16624 lncRNA upstream 230817 46051857 ~ 46052231 (+) True G12445
TU16611 lncRNA upstream 264018 46016372 ~ 46019030 (+) True G12435
TU16741 lncRNA downstream 5262 46290741 ~ 46291068 (+) True G12537
TU16768 lncRNA downstream 187199 46472678 ~ 46472913 (+) True G12559
TU16775 lncRNA downstream 195702 46481181 ~ 46481459 (+) True G12566
TU16777 lncRNA downstream 221585 46507064 ~ 46507393 (+) True G12568
XR_005640566.1 lncRNA downstream 232736 46518215 ~ 46522032 (+) True LOC120567408
XM_039809380.1 mRNA upstream 181721 46080099 ~ 46101327 (+) True gstt1b
XM_039809414.1 mRNA upstream 204029 46068792 ~ 46079019 (+) True ddt
XM_039809348.1 mRNA upstream 217479 46057091 ~ 46065569 (+) True chchd10
XM_039809255.1 mRNA upstream 373258 45869403 ~ 45909790 (+) True p2rx3b
XM_039809149.1 mRNA upstream 591697 45681248 ~ 45691351 (+) True tmx2b
XM_039798275.1 mRNA downstream 32897 46318376 ~ 46337333 (+) True LOC120557716
XM_039805647.1 mRNA downstream 61491 46346970 ~ 46373840 (+) True LOC120562127
XM_039815239.1 mRNA downstream 107367 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039808768.1 mRNA downstream 560538 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA downstream 560538 46846017 ~ 47125487 (+) False LOC120564084
unassigned_transcript_72 other upstream 75323 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 76044 46206932 ~ 46207004 (+) True trnat-ugu
TU16690 other upstream 113359 46166405 ~ 46169689 (+) True G12491
unassigned_transcript_69 other upstream 118495 46164482 ~ 46164553 (+) True trnae-cuc
TU16442 other upstream 637075 45638080 ~ 45645973 (+) True G12311
TU16762 other downstream 130949 46416428 ~ 46417773 (+) True G12553
XR_005640059.1 other downstream 560538 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other downstream 560538 46846017 ~ 47120976 (+) False LOC120564084
TU17111 other downstream 2143321 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 2143374 48428853 ~ 48488219 (+) False G12872

Expression Profile