RNA id: TU2535


Basic Information

Item Value
RNA id TU2535
length 240
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G1817
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5689969 ~ 5692473 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgttgtgtgtatgtctgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2530 lncRNA upstream 38809 5637700 ~ 5651160 (+) True G1813
TU2508 lncRNA upstream 202220 5483542 ~ 5487749 (+) True G1792
TU2506 lncRNA upstream 214304 5474433 ~ 5475665 (+) True G1791
TU2453 lncRNA upstream 218560 5468671 ~ 5471409 (+) False acaa1
TU2489 lncRNA downstream 73501 5765974 ~ 5779474 (+) False G1787
TU2493 lncRNA downstream 73501 5765974 ~ 5779474 (+) False G1787
TU2495 lncRNA downstream 73501 5765974 ~ 5779474 (+) False G1787
TU2499 lncRNA downstream 73501 5765974 ~ 5779474 (+) False G1787
TU2557 lncRNA downstream 74670 5767143 ~ 5858270 (+) True G1836
XM_039809499.1 mRNA upstream 82168 5606454 ~ 5607801 (+) True LOC120564476
XM_039809476.1 mRNA upstream 98961 5589669 ~ 5591008 (+) True LOC120564466
XM_039809144.1 mRNA upstream 171861 5501032 ~ 5518108 (+) True ndufaf5
XM_039808012.1 mRNA upstream 221091 5387393 ~ 5468878 (+) False acaa1
XM_039807758.1 mRNA upstream 318199 5361351 ~ 5371770 (+) True btbd3a
XM_039808416.1 mRNA downstream 97824 5790297 ~ 5803234 (+) True LOC120563910
XM_039808423.1 mRNA downstream 97824 5790297 ~ 5803234 (+) False LOC120563910
XM_039808496.1 mRNA downstream 184074 5876547 ~ 5882423 (+) True snrpb2
XM_039808449.1 mRNA downstream 346738 6039211 ~ 6058589 (+) True prokr1a
XM_039808345.1 mRNA downstream 396379 6088852 ~ 6093726 (+) True LOC120563871
TU2438 other upstream 315062 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 362212 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 467225 5218068 ~ 5222744 (+) True G1756
TU2210 other upstream 651255 4977783 ~ 5038714 (+) False G1600
TU2539 other downstream 184135 5876608 ~ 5916374 (+) False snrpb2
XR_005641751.1 other downstream 693129 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 693129 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 693129 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 693129 6385602 ~ 6402040 (+) False LOC120573424

Expression Profile