RNA id: XM_039803634.1


Basic Information

Item Value
RNA id XM_039803634.1
length 3842
RNA type mRNA
GC content 0.57
exon number 24
gene id vps54
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6808752 ~ 6876237 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTatctgctactactactactgctgtgtGTCCGGTTGTTTTCCTCCCGGTTCCTCCGGTATTCCTGTGATGTTGAAGAGGAGAAACGCCGGTTGCTGTGCTTCACACGACAGcTAGCCTCCTGGGAGGCCAGTCCCGATGCCATGGCCTCCGGCCACGGCTCTTCCCCGGTGCCTCGCGGAGGCCGAGACGGGACCTATCACAAGGAGCGGGACGCCCCCCCCCAGCCCCGCTGCCGGGCCCTCCGCTCCCTGCCCGACGTCTGCCCCAAGGAGCCCACCGGTGAGGGGCGGGGCCTGTATGACGGCCCGTCCGTGGTGGCGGAGCACGACCGGTGGACCGTGTACAGCTCGAAGGTCAACCTCCCGGCCGCGCTGAACGACCCGCGGCTCGCCAAGCGCGAGTCCGACTTCTTCACCAAAACGTGGGGGCTGGACTTCGCGGAGACGGAGGTGATGCCCTCCTTCTACCTCCCCAACATCACCAGGGAACACTTCGGGCCGTACCTGCAGGAGATGgctcagAGGGAAAGAATCCATGAACGCTGCAAGACGATCTGTCCCAACAAAGACGACGTGGACGCCGTCTCCAGTATCACCACCAATCACGacaaaTCCCGAGCTGAGTTGGAACAAGTCCCCAAGATCTTCATGAGGCCTGACTTTGCTCTGGAGGACCCGGCCACCTTCAACGCCGTGTTGCCATGGTCGCACTTCAACAGCGCCGGGGGCAAGAGCAGCAGAGACGTGGCCTCGTCCAAACTGCTGCAGGAGAAGCTGAGTCACTACCTGGACGTGGTGGAAGTGAGCATCGCCCGGCAGATCTCGCTGCGCTCCGAGGCCTTTTTCCACGCCATGTCCTCGCAGCACGAGCTGCAGGACCGGCTGGAGGAGACGCAGAGCGCCGTGGCCGTCCTGCGGGGCCGCACCGCCGCCATCGACCGCGTCATGTGCCAGGGCCCGCTGCGGGCCGTCCGCACCGCCCTGACGCGCAACAACTGCGTGAAGCTGCACAACAAGCTGAAGCTGATGGCGGCGGTGCATCAGACGCAGCCCACGGTGCAGCTGCTGCTCTCCACCTCCGAGTTCGTCGGAGCGCTGGAGCTCATCTCCACCACCAAGGAGGTGCTGCAGCAGGAGCTGCAGGGAATCCACAGCTTCAGACATCTGGGCTCCCAGCTGTGCGAGCTGGAGAAGCTGATCGATAAGATGATGGTGGAGGACTTCAGCATGTACGCCCGCAGCGACCTGAACCGCAGCCTGAAGGACGAGCCGCTGGTCCTCGAGAAGGTCTACGACCCAAACGCTGCCTCACAGaaggagcGTCTGGAGTCTCTGGTGTTCGGCCTGCTGCGGCAGAGGAAGCTGGACTTTCTGGACATTTACAGCGACGAGATGATCCTGGCCGCCAAGGCCATCGTCTCTCAGtgtgttgcAGAAAACGTTTTGCtcatagaagatatcgacactGAAGTCGTCACTAAgctagCCGACCAGATGCGTCTGATGACGTTCCCTCAGTGGTTTGAGCTGCTGAAAACCGTCTTTGAgagtttccttctcttcctGCAGAAGATCAAGGCCACTCTGAGCGTGATCAAGAACGTGGTTCTGGAGGTTCTGGCGTCGAACCAGAGGAACCGGCTCCTGGAGGAGGCCAGGTCGGCTCCTTCGGTTCAGGAGTCTCCCGGCGGCTCGTCGCTGCTGCAGGGCGAGGCCGAGCTGGCCTACCTCACGCACGAGGGTCTGTTCATCAGCGACGCTCTGAACGAGGTCTCCAGGATCCAGCAGAGTCGGGCGGAGGCAGCCGGCAGCGACTCGGCGTCCGGCGCCACGGAGAGCTTCGTCAGCAGGGAGCAAAGCTTCATgtccggtgacaaCATGATGCCGTCCGATCTGGAGCTGAACCGCGTGATCAACAACATCCAGGAGCTGCTGCACACCGCCTCCGACGTCAGCCATGACCGCTGCGTCAAAGTCCTCACAGCCAGAGCCAAGGACGGCTCTCTGGAGCGCCTGAGCTCGGCGGAGTTCGTGTGCCTCTCTCAGGCGGTGGAGGGTTTCGTGCGGGACACGGAGGAGCTGTGCGGCAGGCGCAGCGTCTCCCTGAGGGGGGCGCTGCAGAGCCAGGCCAACCGCTTCGTCCACCGCTTCCACGAAGAACGCAAGACCAAACTCAGCCTCCTCCTGGACAACGAGCGCTGGAAACAGGCGGAGGTCCCTTCAGAGTTCCAGGACCTGGTGAACTCCATCGCTGATGGACGAATAACACTACCGGAGCGTAAAATCCCAGGTCCAGAGGACAGGAAGCCCACCGAGTTCCTGCTCGTCAACGGGCAGAAATACGCCGTCATCGGGACGGTTCTGCTGCTGATCCGGATCTTTCTGGAATACTGTCAGTGTGTCAACGACATCCCATCCATCGCCACCGACATGCTGACGCGTCTGTCGGACCTCCTCAAGCACTTCAACTCTCGGAGTTGCCAGCTGGTTCTGGGAGCCGGAGCTCTGCAGGTTGTCGGCCTGAAGACCATCACTACCAAAAACCTCGcattaGCTTCCCGCTGCCTGCAGCTGGTGGTTCACTACATTCCCATCATCAGAGCTCATTTCGAGACCAAACTGCAGCCCAAGCAGTTCAGCGTCCTCAGACACTTCGACCACATCACCAAGgACTACAACGATCACATAGCAGAGATATCCGCTAAGCTGGTGGCCATCATGGACAGCCTGTTTGAGAAGGTTTTATCAAAGTATGAAGTGAAGGCTCCGATGCCGTCGGCCTGCTTCAGAAACGTCTGTAAACAAATGGCCAAGATGCACGAAGCCATTTCTGAACTCTTACCTGAAGAACAGACGCAGATGTTGTTTCTGAGGATTAATGCCAGTTTCAAGTTGCACCTGAAGAGACAGCTGGCTCGACTCGGGGTCGTTAATGACGGAGGACCACAGAACGGgctggtggtggtggacgTTGCGTTCTACACGGAGAACGTCCAGGCGCTGAAGAGCCTCGACCGGCTGGACCTGAACATGGTCGAGATCTGGGAGCAGAAGAGGTGATGGAGGACGCCGACGGCGGGACGTCCAGGACCGAGCGAGCGACCCCCGGAGACACACGGGCGGGGGggaaggaggggtgggggggggccgAGCTCGGCAGCTGGCCGGCCGAGAGTGGCGCAGGCTTTagggaccaaaaaaaaaaccccacaaaaACCGGGAGAATGAAAGCAGCTGGCGGCTTCCTGAACAGCTCCACCTTAAAAGACTTTATCGAGTAACACACAGAGCCTCCTTAAAAAACTGCAGCTGATCGCCTCGTCTCACTGTGTGCAATTCAACGGTAAATTATTAGAGACGGTTTTTAGTGGGAGCCAAGAGTGTGGATAATGTTTTAAGAAAATGGCCGGgtaatttatttttctgtcgTCTTGAAGGCATTCTAcaccaatatttttttttttctccagatgTTGGAGCTGAAGGGATTTTTGATCATCGACGCACTCtgaaactgactttttttttttttgctgtcgcTGTTTTCGCGGACTTTTAGCTGGAACTTCACAGCCAAGGATTCAGGGTTCAGATAACGTGatgatttcattttctccttCCTTCCCTGCTCTGAGAGAATCAGGGTTCCTCCtccactcattcattcattcattcattcattcattcattcatttattcatcagCTGGGTTTGGGTCTTAACTGGTTAAAATGGATTCTTAAACTTTTATACTCAAGAACAAGAATATTTTCCagactttttgtgttttaaggtctggaagaaaaaaaaaaaaaaaaaaaaagaccgtTTTGAGACCTTT

Function

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3214 lncRNA downstream 1658 6804856 ~ 6807094 (-) True G2292
TU3210 lncRNA downstream 3998 6803930 ~ 6804754 (-) True G2289
TU3242 lncRNA downstream 8842 6763493 ~ 6799910 (-) True G2315
TU3243 lncRNA downstream 10950 6763493 ~ 6797802 (-) False G2315
TU3230 lncRNA downstream 75205 6731941 ~ 6733547 (-) True G2303
TU3256 lncRNA upstream 8839 6885076 ~ 6885837 (-) True G2326
TU3257 lncRNA upstream 10129 6886366 ~ 6887399 (-) True G2327
TU3270 lncRNA upstream 13067 6889304 ~ 6889609 (-) False LOC120565104
TU3274 lncRNA upstream 46032 6922269 ~ 6938939 (-) False LOC120565104
TU3276 lncRNA upstream 72032 6948269 ~ 6977637 (-) False G2342
XM_039810402.1 mRNA downstream 227154 6540642 ~ 6581598 (-) True spred2a
XM_039824155.1 mRNA downstream 301308 6494570 ~ 6507444 (-) True LOC120574032
XM_039824067.1 mRNA downstream 304246 6494574 ~ 6504506 (-) False LOC120574032
XM_039824423.1 mRNA downstream 316953 6488020 ~ 6491799 (-) True LOC120574175
XM_039824290.1 mRNA downstream 326382 6476965 ~ 6482370 (-) True LOC120574130
XM_039810502.1 mRNA upstream 13051 6889288 ~ 6938987 (-) True LOC120565104
XM_039820724.1 mRNA upstream 126267 7002504 ~ 7017659 (-) False LOC120571633
XM_039823631.1 mRNA upstream 264497 7140734 ~ 7155323 (-) False zgc:66455
XM_039822887.1 mRNA upstream 264497 7140734 ~ 7155323 (-) True zgc:66455
XM_039811084.1 mRNA upstream 282633 7158870 ~ 7223862 (-) False b3gnt2a
XR_005640961.1 other downstream 13144 6795494 ~ 6795608 (-) True LOC120569746
XR_005640977.1 other downstream 14036 6794604 ~ 6794716 (-) True LOC120569800
XR_005640958.1 other downstream 14546 6794092 ~ 6794206 (-) True LOC120569742
XR_005640975.1 other downstream 15433 6793207 ~ 6793319 (-) True LOC120569795
XR_005640964.1 other downstream 15947 6792691 ~ 6792805 (-) True LOC120569752
TU3271 other upstream 13697 6889934 ~ 6902349 (-) False LOC120565104
unassigned_transcript_2 other upstream 145337 7021574 ~ 7021645 (-) True trnae-uuc
unassigned_transcript_3 other upstream 146880 7023117 ~ 7023188 (-) True trnae-uuc_1
unassigned_transcript_4 other upstream 155857 7032094 ~ 7032165 (-) True trnae-uuc_2
unassigned_transcript_5 other upstream 158932 7035169 ~ 7035240 (-) True trnae-uuc_3

Expression Profile