RNA id: TU3214


Basic Information

Item Value
RNA id TU3214
length 2152
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G2292
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6804856 ~ 6807094 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttaaaaagcagaaatatgctataaaattgaataaaacacccaaaattgtaatgaaagtagtgaactgatccttcattttacttgagaagAGCGTTAAATGGAACCATCCGTGTTCATTTTTTggcaatttggttaaaagaaaccccaaatttctgacacaggagagacaacaggagggttaatcaAATCACCGACCTTGTTCAGGCTCTCGGGGGCGCAAAAAACTGCCGTTTCAAGCTATCAAAAGTCAGATTTTCTGTTCCTGAGTCAAGTTGAAGTTTTTTTTGAGCTCCGACTAAATACGAAACACATCTGTCCAGCTGCGGGTCACATCACCTTCGGTCTCTGAAGCCTACGTCAACACTACAGGCAGCGTTTAGCTCCCAAAATATACGCAAGGAAACTAGACGGGGCTGAAACTAACCGCTATCTTCACTGTGGGttattattttctggatgaacgGATGAGccgtttggtctctaaaatgtagggttgggtatcgtttgggttttttccgataccggtgctaaaacgacaTTTTAAAACTGTGCCGGTGCCATACTTAAAAAATAGggaatagggtattttacaataactttgaatgcaccacgaggcttactagtttcatgtgaacgcaccgtctatgttgtttttctgacaccgGCAGCTGCACACTGCTTAACGTCCTGATGTttgaatcctctccagtgaaatacagacaaccTTTACatcgtttagctgtcagcattttaacagtgtttactccagctgctagctaacggttggctaacgttacctgctgtcaagtgagGTGACATTTAGCTCCCAAATTTAGCTCCCAAAATACACGCAAGGAAACTAGAGAGGGCTGCAGCTAATAACTATCTTcactgtggattattttctggatgaactGATGTCTCTAaaatgtagggttgggtatcgtttgggatTTTTCCGATatcggtgcctgaaccgatacttaaaataaaatggggtaatagggtattttacaataactttgaatgcaccacgaggcttactagtttcaagtgaacgcaccgtctggtGTTTTTCTGACAACGGCAGCGGCACGCTGCTTAACGTACCAATGTttgaatcctctccagtgaaatacagtcaccctttacaccgtttagctgttttaacagtgtttaatccagctgctagctaacggtaggctaacgttacttgctgtcaggtgtagcgttaactagctaacggtaggctaacgttacttgctgtcaggtgtagtgttaactagctaacggtaggctaacgttacttgctgtCAGgtgtagcgttaactagctaacggtaggctaacgttacctgctgtcaggtgtagtgttaactagcgtcacgtgcagcgatgctcctgttgcctctaacgtctgtttcagagcatcagagagcagcgcagaagGCATTTGAttggcaccaaaatctgcgttttgattcggtccggtagataccggtcgcttaggcaccggtgccgtattagcgccgggtttcggtacccaaccctactaaaatgtaagaaaatggtgaaaaatgtggatcggtgtttccccaaaaaagcccaagacgatgtcctcaaatgtctcgtttagtccacaactcaaaaatattcagtttcccgtcacagaggagagaagacactagaacaacattcacatttaacaagctgacatctgagacattttgacttttcatgaaaaattactcaaacagaTTCATCGATTATCAAAACAGTCGCCGATTAATTTAACCCTTGAGTCGTCCACcctgaacttgttgtccttcaggGTCAAAattggcactttttttttttattcatggtcaataaaccagtggtgtagtctacgtgatacgcagtatatacccactaagaaagctccaggatttccatatacccacttaaaaatacCCAATGACCCACAACAACATACTtaacattatatttttgatatattttgaattgtcatctgtttttcttcttcacataggctaaataaagggatttccactgtaaattggtgcataaaagtgtatcagaatacaggaaatgaagtcgttgatgctcaaaacttccctgggggaggacacccagaccccccactatgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3210 lncRNA downstream 102 6803930 ~ 6804754 (-) True G2289
TU3242 lncRNA downstream 4946 6763493 ~ 6799910 (-) True G2315
TU3243 lncRNA downstream 7054 6763493 ~ 6797802 (-) False G2315
TU3230 lncRNA downstream 71309 6731941 ~ 6733547 (-) True G2303
TU3231 lncRNA downstream 72279 6732304 ~ 6732577 (-) True G2304
TU3211 lncRNA upstream 2006 6809100 ~ 6809410 (-) False vps54
TU3244 lncRNA upstream 6348 6813442 ~ 6814405 (-) True G2316
TU3245 lncRNA upstream 6997 6814091 ~ 6814405 (-) False G2316
TU3246 lncRNA upstream 15010 6822104 ~ 6822463 (-) True G2317
TU3247 lncRNA upstream 20049 6827143 ~ 6828105 (-) True G2318
XM_039810402.1 mRNA downstream 223258 6540642 ~ 6581598 (-) True spred2a
XM_039824155.1 mRNA downstream 297412 6494570 ~ 6507444 (-) True LOC120574032
XM_039824067.1 mRNA downstream 300350 6494574 ~ 6504506 (-) False LOC120574032
XM_039824423.1 mRNA downstream 313057 6488020 ~ 6491799 (-) True LOC120574175
XM_039824290.1 mRNA downstream 322486 6476965 ~ 6482370 (-) True LOC120574130
XM_039803634.1 mRNA upstream 1658 6808752 ~ 6876237 (-) False vps54
XM_039803641.1 mRNA upstream 1658 6808752 ~ 6876237 (-) False vps54
XM_039803626.1 mRNA upstream 1658 6808752 ~ 6876237 (-) True vps54
XM_039810502.1 mRNA upstream 82194 6889288 ~ 6938987 (-) True LOC120565104
XM_039820724.1 mRNA upstream 195410 7002504 ~ 7017659 (-) False LOC120571633
XR_005640961.1 other downstream 9248 6795494 ~ 6795608 (-) True LOC120569746
XR_005640977.1 other downstream 10140 6794604 ~ 6794716 (-) True LOC120569800
XR_005640958.1 other downstream 10650 6794092 ~ 6794206 (-) True LOC120569742
XR_005640975.1 other downstream 11537 6793207 ~ 6793319 (-) True LOC120569795
XR_005640964.1 other downstream 12051 6792691 ~ 6792805 (-) True LOC120569752
TU3212 other upstream 48197 6855291 ~ 6876213 (-) False vps54
TU3213 other upstream 48197 6855291 ~ 6876213 (-) False vps54
TU3271 other upstream 82840 6889934 ~ 6902349 (-) False LOC120565104
unassigned_transcript_2 other upstream 214480 7021574 ~ 7021645 (-) True trnae-uuc
unassigned_transcript_3 other upstream 216023 7023117 ~ 7023188 (-) True trnae-uuc_1

Expression Profile