RNA id: TU3219


Basic Information

Item Value
RNA id TU3219
length 1249
lncRNA type inter_gene
GC content 0.46
exon number 8
gene id G2293
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6695425 ~ 6722877 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGGGGAAGGAGTAGATGAGGTCCTCTGGGATGCCGTAGGAGTTTCCGGCAGCGTACACGCCCATGGAGATGAACTCACCCTCCTTGGTGCCGAACCAGATGTCCCTCATGTGGTCGCAGATGGCCTTGGCGGCAGACATGGCGCTGGACAGCTTCCTGGCTTTGATGACGGCGGCGCCGCGCTGCTGCACCGTGGAGATGAAGTCTCCTCTGAGCCAGGTCTCGTCCTTCACGGCGTCGTAGGCGGGCGTCTCGCTGCCGTGCAGGTTGACCTTGGCGTGGTGGACGTCGGGGTACTGGGTGGACGAGTGGTTCCCCCAGATGATGACGTTCTTCACTTTGTCGGAGGACACGCCGCAGCGCATCGCCACCTGggGGGTGGCCCTGTTGTGGtccggtgtttttttttttttttttttttttttttttttttttttttttactgtcaggCAGGAGAAGTTCTCTGAGTCTTGAAGATGGCCACGTTGGCCTTCAGCAGGTCCTTCCTCTCCATCCCCTCCTTCCTGGGCATGGAGCCCACCAAGATGGCCGCGTCCAGGTCCTTGAAGCCAACCTCCACCTTGTCAGTGGGAGGGCGCAGTCCTGCAGCTCCATGACGACCCCGTCCAGCACGGGCAGCATGGGGGGGATGTCCAGCAGGACCAAGATGATTGGCTGGTCCTTCCCGAACACATCTCCCTTGGCGATGCTGTACAGCAGGGAGTAGGCAATCTGGCCAGCAGCGCCGGTCACCACGACACGGATTGGTTCGggCATTTTGGCTAACGGCTGGAGATGCTGTAGGTCTGCGGTGGCTCAGAGTCGGACTAGAGTAGACGGAAGGGTCACCTCTATCCCTTGTATTTCAGTCAGGCGGTGATACGACTCGTCCCACACTCGTTTATGGGACTTGTAGTCTTTTTTATGATGTTAACACAGGCTTTGACAACTGAGCCGACTCGACAAATGGAACACAATCTCCCGTGATGCACCGCTCCGGTCACACCGCGCCCACCGACGGCTTCGCATCAGAGGCAGAGAAGGAGGATTTTctgaaaaggtttttttttgtcaggaaGTTGCACTTTGGCGACATCTCGTGATTCAATTCAAAACACGTTCATAAACCAACGAGCTACGAGATGACTCGTGTTGATTCGGCGCATACaaagaaacattttgaaaataggaaaaaaaggcaaaaggtacaagactgtgtacaagaAACGGTCACTCAGCGGTAGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3221 lncRNA downstream 7702 6697291 ~ 6697726 (-) True G2295
TU3220 lncRNA downstream 13232 6691920 ~ 6692196 (-) True G2294
TU3172 lncRNA downstream 16272 6688689 ~ 6689156 (-) True G2256
TU3164 lncRNA downstream 52650 6644883 ~ 6652778 (-) True G2250
TU3165 lncRNA downstream 60227 6644883 ~ 6645201 (-) False G2250
TU3230 lncRNA upstream 9064 6731941 ~ 6733547 (-) True G2303
TU3231 lncRNA upstream 9427 6732304 ~ 6732577 (-) True G2304
TU3242 lncRNA upstream 40616 6763493 ~ 6799910 (-) True G2315
TU3243 lncRNA upstream 40616 6763493 ~ 6797802 (-) False G2315
TU3210 lncRNA upstream 81053 6803930 ~ 6804754 (-) True G2289
XM_039810402.1 mRNA downstream 123830 6540642 ~ 6581598 (-) True spred2a
XM_039824155.1 mRNA downstream 197984 6494570 ~ 6507444 (-) True LOC120574032
XM_039824067.1 mRNA downstream 200922 6494574 ~ 6504506 (-) False LOC120574032
XM_039824423.1 mRNA downstream 213629 6488020 ~ 6491799 (-) True LOC120574175
XM_039824290.1 mRNA downstream 223058 6476965 ~ 6482370 (-) True LOC120574130
XM_039803634.1 mRNA upstream 85875 6808752 ~ 6876237 (-) False vps54
XM_039803641.1 mRNA upstream 85875 6808752 ~ 6876237 (-) False vps54
XM_039803626.1 mRNA upstream 85875 6808752 ~ 6876237 (-) True vps54
XM_039810502.1 mRNA upstream 166411 6889288 ~ 6938987 (-) True LOC120565104
XM_039820724.1 mRNA upstream 279627 7002504 ~ 7017659 (-) False LOC120571633
TU3121 other downstream 170985 6532264 ~ 6534443 (-) False G2219
TU3116 other downstream 171116 6521506 ~ 6534312 (-) True G2219
TU3119 other downstream 171116 6521506 ~ 6534312 (-) False G2219
TU3049 other downstream 438190 6266606 ~ 6267238 (-) True G2177
TU2942 other downstream 498538 6202326 ~ 6206890 (-) False LOC120563747
XR_005640970.1 other upstream 41663 6764540 ~ 6764654 (-) True LOC120569774
XR_005640881.1 other upstream 42969 6765846 ~ 6765960 (-) True LOC120569514
XR_005640897.1 other upstream 44349 6767226 ~ 6767341 (-) True LOC120569560
XR_005640896.1 other upstream 45306 6768183 ~ 6768294 (-) True LOC120569553
XR_005640898.1 other upstream 46294 6769171 ~ 6769280 (-) True LOC120569564

Expression Profile