RNA id: TU4643


Basic Information

Item Value
RNA id TU4643
length 540
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC120559537
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9474686 ~ 9476015 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataaaaaaataattccagTATTCAACACTTGAGTGGAACGGATGATGTGAgagtgtgtttgcgtgcgtgcctgcgtgAGTTACAGTGACTGGATGAGCGGAAGTGGACTGGATCAGCTTGATAGAGATCGGGTCTCAGCACGGCTGAGCTATCCACTTTGTGTTGTCCTTCAAAGGAAAAACGCCCTGTAAAAGaaagTCTACAGATCCTCCCCTGGAAGGTAGCAGCAAAGGAaaacctggattattttaaattCAGACACACGAGTATGgagaaaaagttaaaacagCTGAAGACTATTTAAAGTAAATGATTGTGTTGCTCATGCGGAGCCAAGTTTCAGGATTGGGACACCAAAGACAGAGCGATAGAGACAGCAGGGGAACTTTTGGTTTGTCGGAGGACGACACTAATGTGAAAAGCTTGAACGCTGTCTGTCTGAGAGCGACACCTGTATTTTGTGAATTGTAAATAAACTCGCTAAGGCAGCTCCTCGCAGAAGCAGGGTCTTCTCTTGGTGCTGGCTCATCAAGCGCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4277 lncRNA downstream 314522 9155939 ~ 9160172 (-) True G3049
TU4276 lncRNA downstream 320995 9153250 ~ 9153699 (-) True G3048
TU4285 lncRNA downstream 347994 9126183 ~ 9126700 (-) True G3053
TU4283 lncRNA downstream 350683 9122785 ~ 9124011 (-) False G3052
TU4661 lncRNA upstream 17783 9493794 ~ 9494486 (-) True G3331
TU4637 lncRNA upstream 32593 9508604 ~ 9526388 (-) False G3312
TU4644 lncRNA upstream 42294 9518305 ~ 9605820 (-) True G3315
TU4634 lncRNA upstream 98892 9574903 ~ 9587986 (-) True G3312
TU4636 lncRNA upstream 98892 9574903 ~ 9640514 (-) False G3312
XM_039801145.1 mRNA downstream 62337 9396830 ~ 9412357 (-) True LOC120559457
XM_039801172.1 mRNA downstream 143140 9304947 ~ 9331554 (-) True hoga1
XM_039800886.1 mRNA downstream 227789 9165988 ~ 9246905 (-) True lcor
XM_039811212.1 mRNA downstream 463116 9006939 ~ 9011578 (-) True LOC120565400
XM_039801061.1 mRNA downstream 519852 8943845 ~ 8954842 (-) True LOC120559379
XM_039801126.1 mRNA upstream 1669 9477680 ~ 9489740 (-) True LOC120559444
XM_039801132.1 mRNA upstream 1669 9477680 ~ 9489641 (-) False LOC120559444
XM_039800965.1 mRNA upstream 49250 9525261 ~ 9567845 (-) False LOC120559295
XM_039800931.1 mRNA upstream 49250 9525261 ~ 9567845 (-) False LOC120559295
XM_039800973.1 mRNA upstream 49250 9525261 ~ 9567247 (-) False LOC120559295
TU4231 other downstream 566608 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 706721 8758649 ~ 8767973 (-) True G2938
TU4012 other downstream 973553 8483712 ~ 8501141 (-) False wipf2a
TU3972 other downstream 1265159 8207252 ~ 8209535 (-) False G2840
TU4635 other upstream 49532 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 73970 9549981 ~ 9567228 (-) False LOC120559295
TU4721 other upstream 550259 10026270 ~ 10042004 (-) True G3373
TU4974 other upstream 1423547 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 1501632 10977643 ~ 10993201 (-) False nacc1b

Expression Profile