RNA id: TU8147


Basic Information

Item Value
RNA id TU8147
length 274
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G5984
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19050562 ~ 19050835 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttattgtggctttcttatagtaaagcataaagcatattcagggttcccatatcttcttaatctcactcatcaaatcaaaatcacattcttttctaggacttttcaggcacaattatcttaagttcaaagaacaaacagcagatttttagagctgacatcaatgtacagaaacatttcttgcaacacaggtgtatgacgttatcttcaccactaccctgttcaccgagttcaccactatcgtcggggtggtcgcagggctcaacataaaaaaaa

Function

GO:

id name namespace
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8146 lncRNA downstream 13496 19023232 ~ 19037066 (-) False cxcl12b
TU8143 lncRNA downstream 39045 19011194 ~ 19011517 (-) True G5980
TU8128 lncRNA downstream 88565 18961212 ~ 18961997 (-) True G5970
TU8110 lncRNA downstream 93931 18956407 ~ 18956631 (-) True G5954
TU8089 lncRNA downstream 120062 18930256 ~ 18930500 (-) True G5935
TU8193 lncRNA upstream 185358 19236193 ~ 19242318 (-) True G6020
TU8200 lncRNA upstream 210400 19261235 ~ 19263727 (-) True G6025
TU8229 lncRNA upstream 336492 19387327 ~ 19394267 (-) True G6052
TU8271 lncRNA upstream 430300 19481135 ~ 19488019 (-) True G6081
TU8278 lncRNA upstream 438753 19489588 ~ 19513951 (-) True G6084
XM_039815221.1 mRNA downstream 13481 19023216 ~ 19037081 (-) True cxcl12b
XM_039815229.1 mRNA downstream 13481 19028240 ~ 19037081 (-) False cxcl12b
XM_039791131.1 mRNA downstream 60076 18985103 ~ 18990486 (-) True gde1
XM_039791367.1 mRNA downstream 68244 18971970 ~ 18982318 (-) True mcrip2
XM_039802476.1 mRNA downstream 245928 18790616 ~ 18804634 (-) True LOC120560204
XM_039804007.1 mRNA upstream 54412 19105247 ~ 19120656 (-) False xpnpep1
XM_039804000.1 mRNA upstream 54412 19105247 ~ 19116930 (-) True xpnpep1
XM_039812164.1 mRNA upstream 70198 19121033 ~ 19142663 (-) True cusr
XM_039785051.1 mRNA upstream 553594 19604429 ~ 19639873 (-) False pnpla6
XM_039785216.1 mRNA upstream 553594 19604429 ~ 19639873 (-) False pnpla6
TU8138 other downstream 68258 18971993 ~ 18982304 (-) False mcrip2
TU8084 other downstream 160342 18884968 ~ 18890220 (-) True G5930
TU7664 other downstream 1168803 17879868 ~ 17881759 (-) True LOC120556582
TU7631 other downstream 1205158 17843936 ~ 17845404 (-) False LOC120556682
TU7616 other downstream 1214801 17830692 ~ 17835761 (-) False epn3b
TU8277 other upstream 458426 19509261 ~ 19545927 (-) False G6084
XR_005640950.1 other upstream 676286 19727121 ~ 19727332 (-) True LOC120569705
XR_005640905.1 other upstream 677261 19728096 ~ 19728310 (-) True LOC120569594
XR_005640939.1 other upstream 678232 19729067 ~ 19729281 (-) True LOC120569665
XR_005640946.1 other upstream 679193 19730028 ~ 19730242 (-) True LOC120569683

Expression Profile