RNA id: XM_039807150.1


Basic Information

Item Value
RNA id XM_039807150.1
length 3141
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC120563090
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18727400 ~ 18736521 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGTTTGCTCGATTGCAACGGCTGATTGAGATTTTGTGGCTTGAGTCCAAAGTGTTGAGAGGATGAAGTACTAGAAATCCCCCGTCTCCTCTTTCAGCATTCCTCAATTTTTTCTTAAGTCAGTGTTAATACACGTGACTATATTCATCATTTCTTTTCAATTCAGGAAGTTCAGAAGTACAGTTCCTTGTCCTGATTCCATTGTTTAACATGCTGCACATCAACAAGAATATGAGGGAATTGGTGGCGTTAGTTGTTGTTATGCCAGGTTTGTCTCAAGTATTGACTGTCAACATAAATCGGTTTTGTTGAGTCCACCACAATGAAATGACGTGTAAGTAAAGGAAGAGGTGGAGAAAGAGTGATCAAAAGGGTGAGGACAAACAATTGCAACAAGATAACAGGACAGAGACAAGAGGAAAGAGAATGGGAGGGAAGCTCACATGTCACCTAAACTCCAAAGAACAGAGGTACATCTCAGAGCACATTGCTGACATCATGGAGATGTTGGCTCCTCTCTATCGATGTCATCTCAGCTCAAATCTACTGACCCACATGAGAAACAAACACATGGAGCCCAGTGAACCGCGCCCTCTGATTCAGCATCCTAAAGTTGTTGCACATGGTGAGTTTGTGTTGGAGGGTACTTTTCCTCAATACATGGATGGGATCTGGACACATCGCCACCTACTGGTCACCAACACTTTTACAGTCGAGAGTCGTGATTCTAAACAGGTATTTGAAGGTGGTTGGGGGTGTAAGACAGAGTTGGTGCTTTCTGGCTGTCATATCTGCACCTCCATACAGGACCATTGTGAGTTAGTGGATGACATGTGCCAACACATCAAAGGTAAATCAGGTGGTAAACTGGCGTGTTGGGATTGCCCCACCACATTTCCTGTCTTCATGCAGCACCCTTACAGTGCCCCAGTGTGTCTGGCCACTGGATCACACCAGGAACAGACACGCTGGGCGAACATACTGCGAGCTGCAACACAACATCAGAGCTCTGCACTCTGGTGTGAAGATTCACCAGAATCTAGGGCCTTCCTAGATGCTGTGTCTTCCTTGAAGAAGCTCAGAGGAAACTGTCAAACAGAGGTATATCCAGTGGGCGATTGGGAGGAGGTGTTGGTAAGCATGGTTATGGAAGAAGTGATGTCCTACCTCAAGGAGCAAGTATTTCCCAGGATTATTGCACATCGCAGCAGGAGGAGGACTGCCTGGCTCAGAgTGCTGACGCCTCTGAGCAGCCACGGACCAGACGATGCCAGGATGTGGCAATGCCTGGACAAGCTGGAGTTGAGCTCAGAGGGGCAAACTTGGCTCCAGGAGACATGGGGAGTCCACAGTGGAACCTGGAGGCCTTTGTTACTCAAAGCTCAGAACGCTCTCTACGAAGTGGTTGATATGTGTGCTGTGATGTTCCGGAGGTTGCTCTCTCGATATCCGTGTTTCTCTTTTAACTCTTCCCAGCTCACAGAGGTGCTGTGTAGGATCAAAGAGAAAGTGGTCAAGcaTCTGGATACAGAACTGTTGGCCCTTCGATCTCAAATAATTCTGGAGGTGGTCCTACAGATAACACTGCCAGCATTTACACATGGTGTGGGTGAGCAGGATCTGTCTTGTTACTATGCCATGGTGCACTCCGAGCAGGCCCTCTTCATTCACCCTGACACCATCTTCCACTTCATCCTAAGAGACAACCTGACCTCTTACATCCAGTCAGtgATGAGGCACTCCCTGCCACAGCAGTTCATGCCTCTCCCTGTCAGTCCCAGGAACCCCTGCAGCTCCAGCTCTAGTTTCTCTGAGCCAGTGTACCACAAGCTGCTGCCTCTTGGTGACTGCCAGCAGAGCATTTGCCAAACCCCTGAAGGCTCCACCTCTGGATCTGAAACACTCACACCAAGCACCGTGTATGACCAGGACGACACTTTGGCCGACTCAGAAAACTCTGTAAACCACACACCCTCAATGCTTGATGCAGGAGAATACATCCATCTCATTGATCCATGAATGAACTGTAGAAGAACACCACAAAGTGAAAGTGTAGTAGTAGATCATGTCATCGGTATTCTATTTGCATTTTCCACAACAAAGATATATAACTCAAATAGAAAGCTATACAGCTATAGTATATGTTGAAACTGGTTCAGACTAATCGACAGGCATTGAAAGGTTCAGTTTGTAActttcataaaaaataactttttgtcatatttgctcaaACTGTAACTATGTCCTGACAGTACTACATGAGTCAGataatctgtgaaaaaaaaaaatcacgttTCTCTGCCACCTCggaaaacaaccaatcagagtcgAGGAGACATCTCGTCAACTCTGATCAAACTGTAAAACTAGCCAGCACTGATCAAAGGTTAATTAAGATTCTGTTACTGCATTGCATAGTTACTGATTAGCTGTAAAATAAAGTTTGCTCCGGCAGGCTTGGCTTGGTTTTGGCTTTACTGTTTTCAACATGGTGACAGTACTGTATAGTACACTGAAATCTGTtcctgaaaacatttgaggatGAGAAATAGTCAATGCAGTAACAGAatcttgattcatatttgatcagtgctgcctagtttgacagtttgatcGTAGGTCACAAGCAATCATTGACAAGCGACTCCTCAGCTCTAGTTTGTTGTTCTTGCAAATGCCATTAGGATGGAGGAGGCAGGTCGAGGGACATTTCCAGAGATTATCTGTCTCATGTACTTCTGTCAGCATATGGTGAGAGTTTTATCAAATAGGACAAAAACTTATTCTTATCAAAGTAACCAACTGCAGCTTTAAACCATTAATCATCATTTATAACCTGATAACCTCTCTGTACTTCtgctactgtatgtgttttataGTTATATTAAAGGTGAAACGATTAATCAAGTCAATGGACAGAAAATAAATCAGcgactattttgataatctaaTACTTTTGCCTTACTTCATAAAGAAATTGACATATTTGGATttgagactgttggtcagacaaaacaagcattttgAAGAATTTACTTTGAGTACTAAAAAATTGTGATTCGTATTTCCGAAGTCAAGTTTGAAAAGCTTTGATATAGCTATGCATTTCATGTAAATGAGTAAATTGTCCATCTAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8026 lncRNA downstream 38355 18630276 ~ 18689045 (-) True G5894
XR_005636725.1 lncRNA downstream 62893 18663944 ~ 18664507 (-) True LOC120545674
TU7874 lncRNA downstream 139864 18584673 ~ 18587536 (-) True G5809
TU7862 lncRNA downstream 152069 18575017 ~ 18575331 (-) True G5801
TU7861 lncRNA downstream 153146 18574050 ~ 18574254 (-) True G5800
TU8074 lncRNA upstream 100267 18836277 ~ 18857539 (-) True G5921
TU8079 lncRNA upstream 138865 18874875 ~ 18875738 (-) True G5926
TU8089 lncRNA upstream 194246 18930256 ~ 18930500 (-) True G5935
TU8110 lncRNA upstream 220397 18956407 ~ 18956631 (-) True G5954
TU8128 lncRNA upstream 225202 18961212 ~ 18961997 (-) True G5970
XM_039807123.1 mRNA downstream 650 18712936 ~ 18726750 (-) True LOC120563085
XM_039814348.1 mRNA downstream 16680 18705404 ~ 18710720 (-) False LOC120567388
XM_039814356.1 mRNA downstream 16680 18705404 ~ 18710720 (-) True LOC120567388
XM_039814364.1 mRNA downstream 21646 18702438 ~ 18705754 (-) True LOC120567401
XM_039798093.1 mRNA downstream 34137 18676399 ~ 18693263 (-) False LOC120557593
XM_039801535.1 mRNA upstream 7559 18743569 ~ 18751991 (-) False LOC120559642
XM_039801526.1 mRNA upstream 7559 18743569 ~ 18751991 (-) True LOC120559642
XM_039801562.1 mRNA upstream 16649 18752659 ~ 18766884 (-) False LOC120559658
XM_039801571.1 mRNA upstream 16649 18752659 ~ 18766834 (-) True LOC120559658
XM_039806989.1 mRNA upstream 47915 18783925 ~ 18787858 (-) True LOC120562921
TU7664 other downstream 845641 17879868 ~ 17881759 (-) True LOC120556582
TU7631 other downstream 881996 17843936 ~ 17845404 (-) False LOC120556682
TU7616 other downstream 891639 17830692 ~ 17835761 (-) False epn3b
TU7590 other downstream 1013502 17710646 ~ 17713898 (-) True LOC120560175
TU6856 other downstream 2379478 16345770 ~ 16347922 (-) True LOC120558720
TU8084 other upstream 148958 18884968 ~ 18890220 (-) True G5930
TU8138 other upstream 235983 18971993 ~ 18982304 (-) False mcrip2
TU8277 other upstream 773251 19509261 ~ 19545927 (-) False G6084
XR_005640950.1 other upstream 991111 19727121 ~ 19727332 (-) True LOC120569705
XR_005640905.1 other upstream 992086 19728096 ~ 19728310 (-) True LOC120569594

Expression Profile