RNA id: TU6856


Basic Information

Item Value
RNA id TU6856
length 2061
RNA type TUCP
GC content 0.46
exon number 2
gene id LOC120558720
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16345718 ~ 16347922 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAAAATGAGAAATCAATGAATGGTTATAGTGATAGACACTTTTCAACACTTAGACTAGAAAGGCGCCTTCACTCTACTCTCTCCTCTACACACTATTCTAGCGTCTAACTAATGAGGTTGACATCAATCCAAAACAGTGGCTCATGAATGCTTCTACCTGTCACCCAGAGCTCAGAAACATCTGGAACAGTGTCGGTGGTGGTGTCAGTGGTTGTGATGGTGACGTGGCCAGATGGTAGAGTGGTGGGAAGATTAAGGTGGAGGATGGACAAGATGGATGTGGTATGGGATGAGGACAATGCGTTCTTCCTGTCCTCCACACAGGATCCTCCTCCTGCCTCTGACCCTTCGAGCCGCTCTGAGCTGTCTGCCCACCGATCCTCCTCGAACGGGGCCGAGGGGTACACCAAGCTGCTCAGGGCTGCATTGTTGGACCAAGGAGTGGAAGAAGTGGGAAGCGGATGAGGGAGGGGGATAGAAAGGTGAACTGGTCATGGAGATTAGGAGGTATTTTTTATTCTATGGCgcagaaaacacagagacagggaTGGCTTGCTTTCCCTGAATTTTGCTATTCTACTTTTGATCCTTACAGAACAGCTGGCTCCTGGTAGGGCAGAGCTCATGCAGCACCAGTGTCCCTTCTGCAATGCAGCATTTCTTTGACCTCTGATAAAATACCCCAGATTTTCTTCAAACATAGCTAGCACTCTGCTAAAAAATCACTGCTGCACATGCTCAAAAATGTAATACCATATCTTATTTAGTTAAGATAGTGGTGGAATGAGGTTGGCATGAATGGACACATTACTAACATATGACTGATGATTTACATCTGCTAGGAAGCATCCACACTTTACTCAACTAAGGTTACTTTGGTGTTATGGCTTGTAGAAGAGAAACAATAAAGCAAAGATCTACACTTAGTATAATCAAGTTAGCAGTGAAATAAAAGGCTACAGTCAAGAGGAGGGTAGACACCAGACCACAGTCTTTCTTACACATGGAACGACGGAAGAGGGACTTGACTTTGTCTCTGTCCTTCAGCCTGTTCCTCATACGGGGAAACATTTTGGTCGCTGTTTAACAGCAAAGTGCAGCCACATGGGAGGTAGACAAAGGAATGGATGCAAGCAGAGATAGGGATGTAAGAGAGGAGACAGGTAGGTAGGGAAGGAAATGAAAAGACAAAGGGAAAGAAGGTAGGCAGGGGTGAAGAAATACATTAAGAAACAAGAAAGACATGGGGAAGACATATTGAGGACTGTTGAGGAAAGTTTACACATGTCATGCATCAGCACAAATGACCCTTtggacatgacacacacacacacacacacacacagacacagacacacacacagacacacacgcacacacatattgcAACACCtgcattatttatgtatttatcacACAGTTTTACTTTAAAATCCATTTATTTGAGTTTTTGCGTTTCCTTGGAAAATTCTGAGGTGGAGGGGGAAGTTTTAATGCCTGTTCTACAAGTGCAGCTTCATGTGTAGATGAAACGGCTGTGGCTTTCGGTTCACCCGTGTCTCTCTGACCTCTGGCTGTGGGCTGGTCTTTACATGAAAACACTCCTGAATGATCTTTGTGCCCTGCCTCTGATGATGATCTTACTTCCTGGTCTATGGCTGAAGCAGGGAAAGGGGGACTTTGGTACTTTGATGAGACCGGTTCCGCCAGGTCAATGAGGGAGGATCTGAATTCAAGAAGGTCATACTCACTGCTGTTACGCTGGGGTGAGATGGCATCACCTGCTAAGGCTGAGCCTCCAGAGCCATCTGAGCTGACGAAGGAGCTGTTGTCCTGACAGTTTCAGGGTGATCCAGTTTCCACGTCTGTGAAAGGGCAGACAtacaagaggaaagagaaaccTTAACAGAATGAGACACAAATAACCCGTACAGGGAGGCCAGGCTGGTCGGCAGGCCAAAGTATTGGGCAGTCAATCACCAATATTGCAGAAGTGAGCTAGACCAGCAATAAATGTTAATGTATGTTGGATATTCAGAATAAACAATGGACACTTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6844 lncRNA downstream 19924 16325521 ~ 16325846 (-) True G5069
TU6843 lncRNA downstream 20447 16325015 ~ 16325323 (-) True G5068
XR_005639170.1 lncRNA downstream 29883 16311929 ~ 16315887 (-) True LOC120558721
TU6646 lncRNA downstream 88199 16195274 ~ 16257571 (-) True G4915
TU6617 lncRNA downstream 296141 16049388 ~ 16049629 (-) True G4886
TU6857 lncRNA upstream 344 16348266 ~ 16349983 (-) True G5081
TU6854 lncRNA upstream 2145 16350067 ~ 16352468 (-) True G5079
TU6910 lncRNA upstream 301123 16649045 ~ 16651526 (-) True G5125
TU6930 lncRNA upstream 414446 16762368 ~ 16792849 (-) False G5140
TU6929 lncRNA upstream 440623 16788545 ~ 16843003 (-) False G5140
XM_039813974.1 mRNA downstream 62084 16246404 ~ 16283686 (-) True LOC120567135
XM_039805913.1 mRNA downstream 267427 16064549 ~ 16078343 (-) True sec23b
XM_039804834.1 mRNA downstream 287417 16050764 ~ 16058353 (-) True LOC120561637
XM_039795602.1 mRNA downstream 311155 15994372 ~ 16034615 (-) True nomo
XM_039804658.1 mRNA downstream 446369 15816338 ~ 15899401 (-) True LOC120561525
XM_039799790.1 mRNA upstream 4719 16352641 ~ 16356941 (-) True wfikkn1
XM_039799845.1 mRNA upstream 9141 16357063 ~ 16362428 (-) True LOC120558696
XM_039799777.1 mRNA upstream 17343 16365265 ~ 16381421 (-) True LOC120558661
XM_039799768.1 mRNA upstream 17343 16365265 ~ 16367912 (-) False LOC120558661
XM_039799748.1 mRNA upstream 35864 16383786 ~ 16402403 (-) False pdcd11
TU6504 other downstream 916214 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 1441561 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1626668 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2778504 13531753 ~ 13567266 (-) True G4168
TU5472 other downstream 3305536 13037280 ~ 13040234 (-) True LOC120560438
TU7590 other upstream 1362724 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 1482770 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 1496014 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 1531946 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 2537046 18884968 ~ 18890220 (-) True G5930

Expression Profile