RNA id: XM_039804834.1


Basic Information

Item Value
RNA id XM_039804834.1
length 1624
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC120561637
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16050764 ~ 16058353 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gatgaGATGCATCCTATTGAcagagaaggggagagagagagtgagaccgACAGTCTCACACTTGATTCAAGCGAGCGTCACTCCTTTGACAGCCTGACATCCTATAGGCTGGACGTTCGTGGGACACCGCGCGTGataacgacaaaaaaaaaaaaaaaaagtctaacaaAAGTGACAAGTTAGAGGTTACACTTGTTGGCACACAGCTGAGCTCAGTATGGGGACGCTGTCGGTAATCTGCGCATCAATGGAGATGTTTGGTAACTGTAGAGTGACAAATGGGACCCGTACTTCACAGGGGCTCGTGCATGTAGGCTACTCCACTTAGCACGCAGGAACTTTTCCTCCACGCGCCGCTGCATCCTTCTCACGGACAATGAAGACGACTCGCAAATGCAGGAGCCTTCTGTCAGTTAGCTTGAACTTCTTCGCCCTGTTCTTCTCAATAACGGCGTTTATAACGACTTACTGGTGCGTGGGGACCCAGAGAGTCCCCAAGCCAAAGTGCAGCAAGCTgaggacacaccagtgcatagACTACGGAGTGAACGAGACAGACCCGAACAAAGTGGTGTACAGCTGGGAGACCGGGGACGACAGGTTTCTGTTCCGACAGTTCCACACCGGCATCTGGTTCTCATGTGAGGAAAATATCCACGATGAAaGTGAGATGTGCAGAAGCTTCATCGACTTGGCTCCTGCATCAGAGAAAGGGATGCTGTGGCTGTCGCTGGTTTCTGAGATGTTGTACATTGTTCTGCTGGTGGTGGGATTCAGCCTCATGTGTTTAGACCTGGTTCACTCCAGCAACGTCATTGATGGACTAAAGCTCAATGCCTTTGCTGCCGTCTTCACTGTGCTCTCAGGTCTTCTTGGCATGGTCGCTCATGTGATGTACACACAGGTCTTCCAGGTCACTGTCAGCCTTGGCCCACCTGATTGGAGGCCCTACAACTGGGACTACGGCTGGTCCTTCTGCATGGCCTGGGCATCCTTCACCTGCTGCATGGGCGCATCAGTCACCACCCTCAACTCCTACACGAAGACCGTCATCGAGTTTAGGCACAAACGCAAGACCTTTGAGCAAAGCATCCGTGAGGAGCAGGCACGGGAGGCTTTCGGATATTTCCGGGAACGCTCCCTGCACTCCATCTCCAAATCCGTGGAGGTTTATTCCAGCCAGACCTTGAAAAGTGGCAGGAAAACGCTCATACCGGCTGACTCTCTGGACCTGAGTGACATTCCAACATCTTTGGGGGAAGAGCAGTGCTGAACGGGACAAGACAGAAGGTGGCGGCATTCCTCTTGGTGTGGCAACTTGATGAATAGAAGCGCTGTTGTCATTATGCGTTTGCCATTCAGTACtggactagtctcgcattgccagaccttcctccacagcgctgcggaggagggtctggcaagtccacacagcattccgggatgggagaaaaactgctctggtttattggcatttctttaaaccaatcacaatcgtcttgggcagcactAAGCGCCATACGGAGCActgcgcctctgcaaaatagcctcaggaagcaacttgttttggtggaacgtgtacgttcaaagtttgttttagttgtgcaacagaaaactcagattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6617 lncRNA downstream 1135 16049388 ~ 16049629 (-) True G4886
TU6610 lncRNA downstream 1884 16047844 ~ 16048880 (-) True G4881
TU6580 lncRNA downstream 56679 15993604 ~ 15994085 (-) True G4860
TU6529 lncRNA downstream 269011 15781397 ~ 15781753 (-) True G4815
TU6513 lncRNA downstream 314586 15735789 ~ 15736178 (-) True G4799
TU6646 lncRNA upstream 136921 16195274 ~ 16257571 (-) True G4915
XR_005639170.1 lncRNA upstream 253576 16311929 ~ 16315887 (-) True LOC120558721
TU6843 lncRNA upstream 266662 16325015 ~ 16325323 (-) True G5068
TU6844 lncRNA upstream 267168 16325521 ~ 16325846 (-) True G5069
XR_005639169.1 lncRNA upstream 287365 16345718 ~ 16346195 (-) False LOC120558720
XM_039795602.1 mRNA downstream 16149 15994372 ~ 16034615 (-) True nomo
XM_039804658.1 mRNA downstream 151363 15816338 ~ 15899401 (-) True LOC120561525
XM_039803969.1 mRNA downstream 365125 15428356 ~ 15685639 (-) False sdk1a
XM_039803962.1 mRNA downstream 365125 15428356 ~ 15685639 (-) True sdk1a
XM_039810016.1 mRNA downstream 626378 15419252 ~ 15424386 (-) False LOC120564766
XM_039805913.1 mRNA upstream 6196 16064549 ~ 16078343 (-) True sec23b
XM_039813974.1 mRNA upstream 188051 16246404 ~ 16283686 (-) True LOC120567135
XM_039799790.1 mRNA upstream 294288 16352641 ~ 16356941 (-) True wfikkn1
XM_039799845.1 mRNA upstream 298710 16357063 ~ 16362428 (-) True LOC120558696
XM_039799777.1 mRNA upstream 306912 16365265 ~ 16381421 (-) True LOC120558661
TU6504 other downstream 621208 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 1146555 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1331662 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2483498 13531753 ~ 13567266 (-) True G4168
TU5473 other downstream 3010530 13037280 ~ 13040234 (-) False LOC120560438
TU6856 other upstream 287417 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 1652293 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 1772339 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 1785583 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 1821515 17879868 ~ 17881759 (-) True LOC120556582

Expression Profile