RNA id: XM_039804658.1


Basic Information

Item Value
RNA id XM_039804658.1
length 4279
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC120561525
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15816338 ~ 15899401 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctcctccttctcctcctcctccttcttgtcCTCCCTCTACTTCCACTGCTTCCTCCCGTCGCGCTGCGCAGAGCAGACGGTCCTCCAGCTCCGTTCAGCCCCGGTGCGAAGATGGTTGGCGGCTTGTGTGCACGCAGGTTGGCCCGCCGGTCGCGGTCCGCCTTGATAGCAGCCCTCACGGTGCTGCTCGTGCAGACGCTAATTGTGTGGAACTTCAGCAGCCTCGACTCCGGCGAAGACAGGGAAAACGGAGGCTCCAATGTGCGGGAGAAGAGGGACCGGTTCGCAGGCAACAAAGCCGCTGGCAGCGACTATTTCCAGCACGGGGTCCCGCGGCAGCGGCAGCATCTTCCTCCGCCTGGGAAGGGGACTTCTCGCCACATACAGCAGCCGGATGGATATTACTCGCACCGGCCAAAGGAGAAAAATAGAGTGGACAGCAACAACGAGAACTCTGTGCCAAAAGACTTTGAGAACATAGACAACAGTAACTTTGGTGCACGCTCACAGCCACACCGGCAGTCTGTAGGGGCCACCAGCagcaagcagcagcagcgggaGAATCTGCAGGACAAGGCCCACGCCCAGCAGCAGGCCTGGCGGGACAACTCCCCGAGTCTGGGCCGCAGCTCAAACGAAGTGCTGCCTGTAGGCCACCAGCCGCTGGCAGTCAGCAACAATGCCTCCTACCCAGGTGATCAGGGCGTCGCGGGAATATCGCGTCAACACTACCGTGCCTCACAGGCCCAGCAGGCCCAGTCACAGCACAGACATCAGCACCCGCACAAGAGGCAGGCAACTGCAGCGCCACTGGAGGTGACCTACGACCAGCCACCCAAGTGTGAGATCAGTGGGAAGGAAGCTATTTCAGCTCTTTCCAGAGCCAAGAGCAAGGAGTGCCGGCAACAGATCGCTGAGGTGTACTGCAGACACAAGGAAGGGCAGTTAATGCCTGAGAAGGTCACTCGCTACTGCCCCCTCGAGGGTAAAGCCAACGCTAATGTCCAGTGGGATGAGGACTCTGTGGAGAGCTTTCCATCAAAACCAGTCAGAATAGCGTTTGTCCTGGTGGTCCATGGACGAGCCTCTCGCCAGTTTCAACGCCTCTTTAAAGCCATCTACCACACCTCGCACTACTACTACATACATGTCGATCAGCGCTCTAACTACCTGCACAGGCAGGTGCACACCATGGCTGCCCAGTATCCAAATGTGAGGGTGACACCCTGGCGCATGGCCACCATCTGGGGTGGTGCCAGTCTGCTGACCATGTATCTTCGCAGTATGGCTGACCTCCTTGCCATGAGGGACTGGAGCTGGGATTTCTTCATCAACCTCAGTGCTGCCGACTACCCCATCAGgACCAACAACCAGCTGGTGGCCTTCCTGTCCAAATACAGAGACATGAACTTCATCAAGTCCCATGGCAGGGACAACGCCAGGTTTATCCGTAAGCAAGGTCTGGACCGTCTGTTCTTTGAGTGCGACACCCACATGTGGAGGCTGGGTGACCGTAAAATCCCAGAAGGCATCTCAGTGGACGGCGGGTCCGACTGGTTCCTTCTCAACCGCATGTTCATCGAATATGTCATCAACTCCAAGGACGACCTGGTCACCAACATGAAGCGCTTCTACGCCTACACTCTGCTGCCAGCCgagTCGTTCTTCCATACGGTGCTGGAGAACAGCGCCCACTGTGAGAGCATGGTGGATAACAACCTGCGCATCACCAACTGGAACCGCAAACTGGGCTGTAAGTGCCAGTACAAGCACATTGTCGACTGGTGCGGATGCTCCCCTAATGACTTCAAGCCTGCAGACTTCCACCGCTTCCAGCAAACAGTGCGGCCCACATTTTTTGCCAGGAAGTTTGAAGCCAGCGTGAACCAGGAGATAGTGAACCAGCTGGACGCCTACCTGTTTGGACCGTTTCCCCAGGGAACGCAGGCCCTAAACTCATACTGGGAGAACGTGTACGAGGAGCCAGATGGCGTGGCCACTCTGTCGGACACGCAGCTCACGTACTTCCACTCCTTCTCACGGCTGGGCCTGGCCAGAGCTGCCGCCTCGCTGCAGGGAAACCCAAAAGATCACAGCTGCAGGTACTTCCCCATGGGCCACCCAGtgtcggtgcatctctacttccAGTCGGACCAGTTCCAGGGCTACCTGGTCAAGCACCACGCCACCAATCTGGCAACTAGCAAGCTGGAGACCATGGAGACCTGGGTGGCACCCAAGAAGAACTTTAAGCTAGCCACCCCTCCCAGCAGCACATTCAGCAGGTTGCAGTTCGCAGAGATCGGTACTGAGTGGGATGCCAAAGAACGTATGTTCAGAAACTTTGGCGGCCTAATGGGCCCCATGGACGAGACAGTGGGCATGCAGAAGTGGAACAAGGGTCCTAACATCACCGTCACAGTTGTGTGGATCGACCCCACCAATGTCATCGCGGCCACCTATGACATTCTGATCGACGCCAGCGCAGAGTTCACACACTACCGCCCGCCGCTCAACCAGCCTCTGCGGCCCGGTGTGTGGAGCATCCGCATCCTGCACCACTGGAGCCCTGTGGCTGAGATGCACTTCCTCATTGCCCCGTTGGCCTATAACAAGCACCAGCCAATACGAcaagAGGATACTCTGAAGCTTCACAACGGGCCAGCGAAGAACAGCTACATGGAGCAGAGCTTCCATGGCCTCAACCCGGTGCTCAACATCCCCGTCAGCCTGGGTTACGTGGAGCAGGCCAAGAGGAACGCGGCCCTGACCGGCCCAGAGCTCGAGCGTTGGTTAGACAGCCTGGTGGGCGAGTTGTGGGAGGCTGCCGACATCTGCGCCGTGGGCCCTACAGCCTGCCCTGTCATGCAGGCCTGCCCTAAGAACCCTTGGAGCTCCCTGAGCCCAGACCCCAAATCCCAGCTGGGAAGCCCGCGCGCAGACGGGCGCATCAGGTAGCAGCGAGGCCTCCAGCTGGACAGGAGGCCACGGCACAGGAGATTCactgttgatttttatttatttaaggggttTGCTGCAGGTGGAGAAAGGAAAAGGGTTATTCCTCTGTCTCGGGAGAagagggaaacaaaagaaaaagtggATTTCCTTGGGAGGTTGATGAGGGTGTCTGGACAGAAAACGGGGAGAATGATTTTCAGATCCTCCCACGGGGTTCCTCCTTTTAGGGGATTATGCTGGCTTTGCTATTTCAGTTTCtcagtgtatttatttttcttctcatGGCTGAGTTTTACTGTGATCAAACGTTGCAATTTTCAAGCATTTATTTTGCTGCTGAATGAATTATGAAGTCAGCTTCTAAAGCCCTGCGCGGGGCACAGCGGTCATGCGACACTGGTAGCAGAGGAGGTTCTGCTGCGAAAAGGCCTTAGCTGTAAGACCAGAGGAGGTAGCCTGATACTGAATTAAATGTTCCACATAAACAAAATGTGATGAGATCTGAGTGTTCAGATACACCCAAACAGTCGAAAAGATTGTTTTGATACAACACAAATGCAGCACTATTAAAAGCAAATTTCCTGTTTATGGAGAACAAATATTTTAGCATTATTAAAGCTAATTACTGCGAAACTCTTTGAGTTTCTGATAGTTCAGTGGCTCAGTTTGTAAATCAGTAGAATATATCAGTAACAGCAGCCCAACTTCTTCTAGTTCAGTGCCTGATCAGGATGTGGAACTGTTGTAACCATCTGCTGCAGTCTCATTTCGTAAATATGGAAATAGAGAAATGCAAATACAGAGGCCTTCTCAGAATAATTAAACCTATTTGGATTATGATAGAAATTTAATGTAGACATTTTAGTGTTCTAAATTCATAAATGCTTCATTTGTGGTTGTTGTACAATAGTATTTTAAGACTTCACATAGTGTaggtttgtttttaataaaaacccagatgttttttttacagtaaaaggCAGAGGGCGTCTTAGTTTTCTTACAAACCTGCCTCAAACTTGAAACACAATTATCTCAAACTGACCTTAAAATACTCATCCTCATTTTCAGCGTCATCTCTTTTACTTTCTTACAGTCATTTCGATGACACTTTATGTAGAACATTATTATACAAGAAGTCTCAAAAGTTGTGTGAatgaggaggggggagggaaggggggtggggggtgagtCCATGAGTCGCTATTTATTTATAAGTTTATATTAATACTGATATTTTTAGTCAGTGACTAAATAACTGCGACGCTGCCTTGGCAGCatgataaatatttttttgtatagaaAGCcgcctttatt

Function

GO:

id name namespace
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0030158 protein xylosyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6529 lncRNA downstream 34585 15781397 ~ 15781753 (-) True G4815
TU6513 lncRNA downstream 80160 15735789 ~ 15736178 (-) True G4799
TU6512 lncRNA downstream 80656 15735355 ~ 15735682 (-) True G4798
TU6511 lncRNA downstream 85382 15730655 ~ 15730956 (-) True G4797
TU6420 lncRNA downstream 487047 15328188 ~ 15329291 (-) True G4729
TU6580 lncRNA upstream 94203 15993604 ~ 15994085 (-) True G4860
TU6610 lncRNA upstream 148443 16047844 ~ 16048880 (-) True G4881
TU6617 lncRNA upstream 149987 16049388 ~ 16049629 (-) True G4886
TU6646 lncRNA upstream 295873 16195274 ~ 16257571 (-) True G4915
XR_005639170.1 lncRNA upstream 412528 16311929 ~ 16315887 (-) True LOC120558721
XM_039803969.1 mRNA downstream 130699 15428356 ~ 15685639 (-) False sdk1a
XM_039803962.1 mRNA downstream 130699 15428356 ~ 15685639 (-) True sdk1a
XM_039810016.1 mRNA downstream 391952 15419252 ~ 15424386 (-) False LOC120564766
XM_039810008.1 mRNA downstream 391988 15419252 ~ 15424350 (-) True LOC120564766
XM_039811990.1 mRNA downstream 401375 15410498 ~ 15414963 (-) True gpank1
XM_039795602.1 mRNA upstream 94971 15994372 ~ 16034615 (-) True nomo
XM_039804834.1 mRNA upstream 151363 16050764 ~ 16058353 (-) True LOC120561637
XM_039805913.1 mRNA upstream 165148 16064549 ~ 16078343 (-) True sec23b
XM_039813974.1 mRNA upstream 347003 16246404 ~ 16283686 (-) True LOC120567135
XM_039799790.1 mRNA upstream 453240 16352641 ~ 16356941 (-) True wfikkn1
TU6504 other downstream 386782 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 912129 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1097236 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2249072 13531753 ~ 13567266 (-) True G4168
TU5472 other downstream 2776104 13037280 ~ 13040234 (-) True LOC120560438
TU6856 other upstream 446369 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 1811245 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 1931291 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 1944535 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 1980467 17879868 ~ 17881759 (-) True LOC120556582

Expression Profile