RNA id: TU5472


Basic Information

Item Value
RNA id TU5472
length 1681
RNA type TUCP
GC content 0.43
exon number 3
gene id LOC120560438
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13037270 ~ 13040280 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTGTTAAAATGTCTCCTTAACAACCGAACTGGGAGTCGGGCAGCAGAAGTTTTCGGTGGAGAAACGCCTCgagTCGGAATGGCTGGGACTggtgagggaaagaaagaggaggcCGACTACAAGAGACTGCACAGCTTCCCTCTCATCAGGGTAGGAGAGAAGCGGGACAGTGCCTCTGGGTACAGGACAAGAACATCCTAACTGCGGTTGGGAGCAGTCCATTCTGCAATGACAACATgaacattacattttgattgtATACCTTTGCTGTTTAGGCTGGGGTTTGGGTAGTTGTGGTGTATTAGTAGGCTGCAAATTAACTGTATATGCGTTGTGTTTGGGCAAGTGTCATTAAATATCGGTTTTAGTTTTAcgtaactgtattttttttttttgagatgtAAGAAAACTTCCCAGTGAGACAAAGTGCTACGTTGTGTGCCGATTCAGTCACCAAAACATATGCAAGTTCacaatcaaaaaaaataaataaagacaaagtCAGGCAGGGGAATGTGGACCCTtatgatttgtgtttgtcttcaGCATACGGACATGCCAGAGGAAATGAGGGTTGAGACCATGGAGCTTTGTGTTACAGCCTGTGAAAAATTTGCCACCAACAATgagAGTGCAGCGAAGATGATCAAAGAGTCCATGGACAAGAAATTCGGCAGCTCATGGCACGTGGTGATCGGCGAAGGTTTTGGCTTTGAGGTCACGCACGAGGTGAAGAACCTGCTCTACATGTTCTTTGGAGGGAGTCTGGCCGTGTGTGTATGGAAGTGCTCGTAGCATCTCCTCGCTGTCCCTCCTCCCCTGTGACGTGGTCACGGGGCTGGGAATGAACATTTGTGTTGCGACAGGTCAGTTTGTCCACACTACCAGCCACTGTGGCACATAATAAACAATTATTTGGAGCTCTTGTCCAGTTTTAAAAAGTGTAGTTGGCAGGGAAAAATAGTTGAAAGGGAACTTTAAAGTGCGGCAGTCACTTTGGCTGGAAGGCATACAAAAATAGCTTTCTGCCTCGTCTGTCACTtgcctttttctcttttgttttcaaCCCTCCGTCCGTCTCTGAAGCTGTATCCATGGTTCTAAACCTTTTGTGAGCGTGCATGTGCAAGTAAGTTCAACTTTTACAAACAATACAGCCAATCAGGGTCTCCAAAGTCCTTTTATCCTCATTCCTCTTCAGggagcacgtgtgtgtgtgtgtgagtttataCGTTTGTGTGTGCTGGACACACACTGTTTTTTGAAATGGCATTTCATCATCACCTTCCTCAGCAGTTTGTACAACAGTGAACTGTCCACACCATCCGTCACTTCTCACACCTTTCTCTCCAACCGCACTAATCTTTcaatacaatttttttattgaatgtaATATTTTTTATGTGTACATATTTTGAGGCGACTTGAAGAACTTCTTTTTAAAGATCAGTGTCATCTTCTTACAACTAAAGGCTCAGAGTCTCCTGAGCCAAACAACACTAAACCCGATCCACCTTTTCTCCCTCTAAAGGTGTTTGTAATAATCCCTAATAATATCACCGCACTGGGTGATATTTACAATGTGATTGTTTTCATGTTGATGACAGTTTTAATGATCCAGTGCAATGGACCATTTTGTGTGAATTGACTTGATTGTACAATAAACTCTGAAATGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5400 lncRNA downstream 229382 12804502 ~ 12807898 (-) False LOC120561813
TU5398 lncRNA downstream 238049 12798811 ~ 12799231 (-) True G3940
TU5393 lncRNA downstream 252379 12783201 ~ 12784901 (-) True G3935
TU5383 lncRNA downstream 270177 12763447 ~ 12767103 (-) False LOC120555888
TU5464 lncRNA upstream 18612 13058846 ~ 13065061 (-) True G3995
TU5521 lncRNA upstream 48958 13089192 ~ 13157217 (-) True G4032
TU5528 lncRNA upstream 97824 13138058 ~ 13148603 (-) False LOC120567932
XR_005640640.1 lncRNA upstream 108006 13148240 ~ 13151623 (-) True LOC120567932
XR_005640641.1 lncRNA upstream 111486 13151720 ~ 13152846 (-) True LOC120567935
XM_039802943.1 mRNA downstream 8887 12990564 ~ 13028393 (-) False LOC120560419
XM_039802924.1 mRNA downstream 8888 12990564 ~ 13028392 (-) False LOC120560419
XM_039802933.1 mRNA downstream 8888 12990564 ~ 13028392 (-) False LOC120560419
XM_039802915.1 mRNA downstream 8888 12990564 ~ 13028392 (-) True LOC120560419
XM_039802905.1 mRNA downstream 8889 12990564 ~ 13028391 (-) False LOC120560419
XM_039814014.1 mRNA upstream 4018 13044252 ~ 13068047 (-) True cbx6a
XM_039809720.1 mRNA upstream 58665 13098899 ~ 13115142 (-) True LOC120564587
XM_039809745.1 mRNA upstream 63575 13103809 ~ 13106950 (-) True LOC120564607
XM_039809733.1 mRNA upstream 67072 13107306 ~ 13115140 (-) False LOC120564587
XM_039809726.1 mRNA upstream 67072 13107306 ~ 13115139 (-) False LOC120564587
XR_005639486.1 other downstream 8887 12991667 ~ 13028393 (-) False LOC120560419
unassigned_transcript_56 other downstream 171241 12865968 ~ 12866039 (-) True trnac-gca_3
unassigned_transcript_55 other downstream 174679 12862530 ~ 12862601 (-) True trnac-gca_2
unassigned_transcript_54 other downstream 175515 12861694 ~ 12861765 (-) True trnac-gca_1
unassigned_transcript_53 other downstream 176925 12860284 ~ 12860355 (-) True trnac-gca
TU5715 other upstream 491519 13531753 ~ 13567266 (-) True G4168
TU6167 other upstream 1671969 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 1860916 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 2386310 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 3305536 16345770 ~ 16347922 (-) True LOC120558720

Expression Profile