RNA id: XM_039809726.1


Basic Information

Item Value
RNA id XM_039809726.1
length 4669
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC120564587
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13098899 ~ 13115142 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaacgggAGCGGTCCCtattattccgaggtggcatgaacgcagtaTTATACTTATCAAAAGGAAGTGTGGAATTACCTGGAAAGAGCTAGAGAAAATAATTGGATATCTAAAGCTCAGTTTGAATTCCTTTATTGCCAGCACCCAATACGCCCTTTACGTCTTTTATACACTTCCAAACTTGCATAAATCCTTGACTGAAAAACTATTTCATGTTTAATGGAAACTTTTATTTACAGGAGTCTGGTACAAGCATGGGGTCTATTTGTGCTCCTAATTATGCAAATTTGTTTGTGGGTTACTTCGAAAAAAACTTTGTCATGAATGTCGAAAAAACCACACATCTGTCCAGAATTTGGAAATGGTACAGATACATTGATGATGTATCAAGGCACTATCGATGAACTACTTGGATTTATTGTCTTACTGAACAGTTTTGATGACAATTTGAAGTTCACAGTAGACTATAGCCAGGAGAGGGTTCATTTTCTGGACATGTGGGTTTTTAAAAAGAATTGGTCTACTACATTTTATTGAAAAGAGACTGATAAAAACACTCTTCTTTTGGCGAGTAGTTTTCACCCCACTAAAAAGAGGTCTACCTAAAAGCCAGTTCTTTAGACTCCAAAGAATATGAGACCACTGAGGATTATATGGAAAAAGCAAATGACATGAAAGACAGATTTGTACAGCGAGGTTATCCAATGGAATGGGTTGACAAATCTTACAAAACAGCCCTGAATAAACCTCGGTCAGACTTGctaaagaaaagcaaaaaaaaaagaagtgattttCTGTCACCTGTATCACTACTTACTCTCCTCTCTCACATACCATACgccctatttaaaaaaaatattggcaCATTCTAAAATCGGATCCTAAACTCTCACATGTTGTGAACGGCTTGCCGCTCTTTGTATACAAACGTAAGAAGAATCTCCGAAATCTTCTAGTTCACGCTGACTTTGCGAGATACAAGCCAAGGAGAGCTTTGCAAAGATTATTAAACCCGTTACCTAGGCTACTGGCAACTACCGTTGTGGAGGATGCGCACAGTGCAACAACACCTATAAGACACAGAACTTCCGCCATCCTCACAATAACAAGATTTTTCCAATTAAGAGTGTCATCACTCATGTAGTGTACATTTTAACGTGTCCATGTGATCTGGTGTATGTAGGTAAGACCATAAGGCAGTTAAAACAACGCATTAGCGAACATAAGAGCTCTATTCGCAGAAACGACCGGGATTACCCGGCCGCAATACACTTCAATGATCATTACATCTCATCATTGCGCTTTTGTGGTATTGAACAAGTCAGTCTTCCAAAAAGGGGGGGGCAACCACGACTTGCTAGTAAAAAGACGCGAGGCATATTGGATATTCACTTTACAGACGCTATCGCCAAAAAGCCTTAATGATGAATTTAATCTCAATATTATGTTGTTTATATTGTTTAACGTTTCACAAGTTTTCATAGACACAGATGTAATAAGGTCATTAAATTATACAACCACCTTTCTGATTAGAAGCTGAAGACTACAACAGCCATGTTGGCAGAAGCTGGATGTGTGTTTATGGGTTTGATCCTGTACATCTCAGGAGTTCATGGACGAGCAAACAGCATCTGTGCTTTAAAAGGTTCATCAGTGGATCTGCCCTGCTCAGCTCATCGTCCCACTACAACCATGAAGTGGTACACTGTACACCAGGAACGATCTAAACCTGTTCAGACGGAACTCTCTACAGATGAAAATCGTGTGACGTACAACATGTCTGCAGAGAGTAACTTCACTCTAACAATCAAAGATCTGAGAGAGAGCGATGCAAATGATTACTGCTGCAGAGAGACTACTGACGACCCAGAACTCTGCTGGAACAACAAAACTGAGCTCCATGTTTCAGACCTGCAGGTAAAGGTGATTCCTGccacagagggacagacagtgACACTGATGTGTAGCACCAGCTGTCCTCTGACTGAAAACCCTGCAGTCTACATCTGGTACAAGAACAGAGAGTTCCTCTATCAGGACTGGTCTCCCTGGTACCAACAGCTGGTCAGCAGTGAGGAAGCAGTCACATACTCCTGTGCTATCAAAGGCTACGAGGATCTCAGAGCCCCTCAAGTCTCAGTGGATTCTGTCACGTCGACCTGCTTCAGCGTGACCTATGCTAAAGGGAGAATGTGTTCTTATAAGACGACATCAGAGGAAGAGCCCTGCTCCATCACATATCCCAGAGAAGTACATGTTCAAAGGAGTCCTGAAGCTCCACCGGGCCATGTCACACTGACCTGTAACACAAGCTGTCCTCTGACTCCCTTTATATGGTATAAGAGCAGACTTGTAGTTGAGAAACCAAAGTTTGTAGTTCccaacacctctgctgaaagcTTCTCCTGCGCTGTAAAAGGCCGCGAGGATCTGCGCTCTGCTGAAGTCTGTGTTAAGGATGAGAACTGCTTGATCATGAATTACGTCATCAGGAGAATCTGTGCTCTACGAGGTTCTTCAGTGAACATTTCAAGTGAATACTCTTCTCCCAACGACCACCCCAAGTCTAAACTATGGTATAAAATAAAGAGGAGTGGGAAGAAAGAAGTGAAAGAGTCAATTAATTCTGTACCTCGTATGAAGTATCAAGACAACTTTAGGAATCACCACATCCTGACAATCAGTAATCTGACGAAGAATGACTCAGCAGAATACACATTCAGACTCCACAGCTATGACCAAGGATTGAGACCTGGAGTGAGTTTGGTTGTCACAGGTCTGAGAGTGACGTTTACTCCCTCTGCAGTGGTGACAGAGGGCCAGAGAGTCACCCTGAGCTGCAGTACCAGCTGTCCTCTGACTGACAACACAAACTACATTTGGTACTTGAACAGTCGACCTTTGACCCCGACAGAGAAGCAAAACAAACACCTGGTTCTGGACCCAGTCAGCAGTCAGCATGCAGGAAAATACTCCTGTGCCATCGAAACCCCCCACAACATCAGCTCTGATGAAAAGACCCTTACTGTCCAGAGTAAAATGGGGAAATGGacacaagcagcagcagcagtaatcaTCTGTGCTGCTCTCCTGGTTATTATACCCCTCGCTGCCTTCTGGTGGATCAGAAGAAAGAGGACTTCCAGTCAGCCTCCTAGAACTGAAACCTCAGACAACTTGGAGCAGCTAAACCCTGATCCTGTGTATGAAAACAGCTTAGCTCGACCAGCAGAGCAGGAAGAGCTTCACTATAGAAGACTCCACTTCTCTAAGAACCAGGCAGAACCTCTTTACTCCACCATTGAACCAAATCAGCCCAATTGACAGGAGCATGTGGCTTGTTACTCTCAACTAGACCAGCACGACCCCCAGTGAGCATCTCTTACTATTACAACTGATTCGGGATCTACTTAGTGGCCTTACTCATCTTGATCAGTGGTAATATTTTCAACAACCAGCATTTCAAGGCTTTTTTCCGCCCTCCATTTCACTTCACTCCATGCTAATGTGGACCAGGAGTTCCTTAAAAGTACTGAGCCTCCCGAGCAAAAGCTAATCACTTTGAAACATCTGTCAGAAAAAAAGGCAGAGTGTTTCTGAAGAAGCAGTGACCACTCAGCTAGCACGGAACAGTGCATGTGCTAAAAATCTGcacaacaaagaaaaaatgtaaaaagtggcCTCAGTGACACCATCACTGTTTTTCTCTACAAAACACAACATGACACAAACTTGGAGAGGTCAAAACACCAGCAACACTAGTAGTACTGAAGAATATCTTTAGTTAGACCGATGGGTTTTCGCTTGGGGCCTTTATCAGGGTCATCATACAACATGCATTACAAAGAACATTTAAATAAggaaatatgaaaatatatctatatctacatACATATCTGCCAATGGGGTATTTACACATAAATGGCTTTGGTATATTGTCGAATGGTTTCAGGCTAAGTTGATCTCTTCACTAAACAAGTTGCCAGAGTTTTGACCTCTTCAgacttttttctcttctccatACACCTTGGTAGTAGGAAGTTGAGCCAGAATACATACTCTGCTTCTACACAGCAACAACTTTTCAGTTTTGGACTTTTCACTGCATCATCCACGGAGAGCAGCTGGTGTCCAGAAAGCTGTATTCAGACCACGTTATGACAGGATTTCTCACTTTGTGTGaacttttaaatgaaatgattttGGAAGAGAAGCATAAGGACCATCCTGTGTTCCATAACACCTACTGGATTTTAGATCTGTTGTGGATTGTTGACGGACAGTTGGAAGATTTAAAACTCATATACAGGAAGCTAATAATTCCATGTTGTAAAGGTGAAAAGCAGCAGATTGTATTCATTGGTACTGTCAATGCTGAATCATCACCGTTTTAAAGCAATGTTAGTGTCAGGTTAAGTTACTTCTCAGGGGCTGATTGAACAGACTGACCACACCTGCTCTATTGTACAGATAACTTGAAATGAGGTCGTAAATAGATTGAGTAATGGCACTGCCAAATGTAACGTGGCTTTGTCAGGTAAGCTCATTGAAGCGTTTTTGTTTTCTGGTATGTTGTATtgcttttgattttatttataacTGTAAAAAAGGTTTTTGTAACATGTTCTACCCTGCATTATCTAAAGTGTATTAAAACATACTAGATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5464 lncRNA downstream 42245 13058846 ~ 13065061 (-) True G3995
TU5474 lncRNA downstream 67072 13037280 ~ 13040234 (-) False LOC120560438
TU5400 lncRNA downstream 299408 12804502 ~ 12807898 (-) False LOC120561813
TU5398 lncRNA downstream 308075 12798811 ~ 12799231 (-) True G3940
TU5393 lncRNA downstream 322405 12783201 ~ 12784901 (-) True G3935
TU5528 lncRNA upstream 22919 13138058 ~ 13148603 (-) False LOC120567932
XR_005640640.1 lncRNA upstream 33101 13148240 ~ 13151623 (-) True LOC120567932
XR_005640641.1 lncRNA upstream 36581 13151720 ~ 13152846 (-) True LOC120567935
TU5571 lncRNA upstream 79907 13195046 ~ 13272174 (-) True G4066
TU5634 lncRNA upstream 372781 13487920 ~ 13491997 (-) True G4115
XM_039809745.1 mRNA downstream 356 13103809 ~ 13106950 (-) True LOC120564607
XM_039814014.1 mRNA downstream 39259 13044252 ~ 13068047 (-) True cbx6a
XM_039802959.1 mRNA downstream 67026 13037270 ~ 13040280 (-) False LOC120560438
XM_039802969.1 mRNA downstream 67347 13037270 ~ 13039959 (-) False LOC120560438
XM_039802882.1 mRNA downstream 89049 12992189 ~ 13018257 (-) False LOC120560412
XM_039815025.1 mRNA upstream 25142 13140281 ~ 13165526 (-) True LOC120567925
XM_039814278.1 mRNA upstream 207526 13322665 ~ 13357702 (-) True LOC120567325
XM_039809592.1 mRNA upstream 269672 13384811 ~ 13392035 (-) True LOC120564530
XM_039809617.1 mRNA upstream 278008 13393147 ~ 13404145 (-) True LOC120564537
XM_039809627.1 mRNA upstream 278008 13393147 ~ 13401911 (-) False LOC120564537
TU5471 other downstream 67072 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 67072 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 67072 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 78913 12991667 ~ 13028393 (-) False LOC120560419
unassigned_transcript_56 other downstream 241267 12865968 ~ 12866039 (-) True trnac-gca_3
TU5715 other upstream 416614 13531753 ~ 13567266 (-) True G4168
TU6167 other upstream 1597064 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 1786011 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 2311405 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 3230631 16345770 ~ 16347922 (-) True LOC120558720

Expression Profile