RNA id: TU5464


Basic Information

Item Value
RNA id TU5464
length 1697
lncRNA type sense_over
GC content 0.51
exon number 3
gene id G3995
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13058846 ~ 13065061 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgagctttctgttttagctacagagtgaggcatcgcgcttctgttccatctttgttgggagtcgcacattttcttttttttttttaatcgaggcAAAAATATATGACTAAGGACCAGTAGTATTCAGACCGGAGAGTCAAGAATTGTGGCACCATTGCTTTCTCCAAATACTGTACATCAAGTGTGCTGTCTTTCAGTGGCATTATGTAAcagtcagaaagaaagaaaagaaggtgATATCCATCGCCCACATGTTTCTCACAATGAACCGCTGCCGAGCTCTTTCACTGCAGGTTGTTGCCAGCTAAATGCCGGACCGCTTGAAAGTGTTCAAAGTGCACCTAAAGCACTTCAGAAGAAACCTGACCCTTTATACACAGACTCTCAACCCTTTCCTTGTGCTGCCTGCTCTTTCTATACCTTCCCAGACCTTGGCTCCTACTCCGGAGCACCTGTGCGTTAccatatttaaatataaatcttCCGCATGTGTTGCCTTTATAGCGTAGCTGCTCCATTCAACCCCAGCTGCACTCCAGGCGACGTTCACCTCGTCTTACTCGGCTCTTAAAGCTAATGCTAAACAAAACCTATACTTCTTTACTTGCCGTGGCTTCGGCGGTAGAGATGAACATCGCAAAAACGGTAACAACCTTGAAAGGCTTCTGATGTCTCACTTTCCAAAGTTGCAAATGCAGCGTTCTCCGTGTCTTCGTTAACACAGACGATGAAGATGTCACCTCCTCTCCTGCCATGGACGGGATTGGGTCTAGTTGTTGTCAATACTGTTTCAATACTCTCATAGGTCAAACGTGGAAGGATTTATTCCAAAAATGACACATCCattatatgaagaaaaaaaacaagtggcTTACTCTTATGAAGATCTCTGTAAGTCAAATTCAAATTGaggtactttaaaaaaaaaaaaaaaaaaaagacagtactTACCTTGAATCCTTACTTGAGAAAGTGAAAACACAGACTGCGTTTTCTTGATTTTCCAGAAACGGATGATCTAAAGGAATATTTTCTTCTCCAAATGGATATATCGTGATTTTGGAATAGGTTTTTCCATCTACTATatcgttcatattttttaagTGGTGGATAGAAGTGACTGTTGCAGTTGGTAGATGTGTAAGGTATTAGGCTGCTAAGCCATGTTTCCAACAGTGAtagcaatgtttttttctttcttttttttttcatatggaGTAGCACAACTCAACTTAGTGGCCTATCTTTCAACCAAATAGGGCTCttgattttattatttgactttttttaagccttttttttttttttttttaatatgcatAATATTAATGTGATGCTGTTTATTTGAATGTCATTTATTAGTCCAATATGGGTTTGATAAGAAGGCAAACTCCGACTAATTTTAATGTGTCAAGACTGCAGTTTTGTCTGTTATAATGATAATATGAATTGTGTACATTGTATTGATGGTAATAATGGGGAGTTGGAGGATAATGATGACATTGTAATGTATCTGAACTTCTGAAGCATGTTTTGCCAACCCTTATTGTACAGATTATGTATTCAATGTCATGTTACCTGTTGTTGCTTTCGGTGTGTTTCTTCAACAAGGCTTTTAATTAAAAGCTCTTTAAAAAGCGGTTtgctttgttgtatttttatttattttttggctgCCGGCACTTATTTTGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5474 lncRNA downstream 18612 13037280 ~ 13040234 (-) False LOC120560438
TU5400 lncRNA downstream 250948 12804502 ~ 12807898 (-) False LOC120561813
TU5398 lncRNA downstream 259615 12798811 ~ 12799231 (-) True G3940
TU5393 lncRNA downstream 273945 12783201 ~ 12784901 (-) True G3935
TU5383 lncRNA downstream 291743 12763447 ~ 12767103 (-) False LOC120555888
TU5521 lncRNA upstream 24131 13089192 ~ 13157217 (-) True G4032
TU5528 lncRNA upstream 72997 13138058 ~ 13148603 (-) False LOC120567932
XR_005640640.1 lncRNA upstream 83179 13148240 ~ 13151623 (-) True LOC120567932
XR_005640641.1 lncRNA upstream 86659 13151720 ~ 13152846 (-) True LOC120567935
TU5571 lncRNA upstream 129985 13195046 ~ 13272174 (-) True G4066
XM_039802959.1 mRNA downstream 18566 13037270 ~ 13040280 (-) False LOC120560438
XM_039802969.1 mRNA downstream 18887 13037270 ~ 13039959 (-) False LOC120560438
XM_039802943.1 mRNA downstream 30453 12990564 ~ 13028393 (-) False LOC120560419
XM_039802924.1 mRNA downstream 30454 12990564 ~ 13028392 (-) False LOC120560419
XM_039802933.1 mRNA downstream 30454 12990564 ~ 13028392 (-) False LOC120560419
XM_039809720.1 mRNA upstream 33838 13098899 ~ 13115142 (-) True LOC120564587
XM_039809745.1 mRNA upstream 38748 13103809 ~ 13106950 (-) True LOC120564607
XM_039809733.1 mRNA upstream 42245 13107306 ~ 13115140 (-) False LOC120564587
XM_039809726.1 mRNA upstream 42245 13107306 ~ 13115139 (-) False LOC120564587
XM_039815025.1 mRNA upstream 75220 13140281 ~ 13165526 (-) True LOC120567925
TU5471 other downstream 18612 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 18612 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 18612 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 30453 12991667 ~ 13028393 (-) False LOC120560419
unassigned_transcript_56 other downstream 192807 12865968 ~ 12866039 (-) True trnac-gca_3
TU5715 other upstream 466692 13531753 ~ 13567266 (-) True G4168
TU6167 other upstream 1647142 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 1836089 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 2361483 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 3280709 16345770 ~ 16347922 (-) True LOC120558720

Expression Profile