LOC120555888


Basic Information

Item Value
gene id LOC120555888
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12763447 ~ 12767103 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU5382
GCATCcggatgaccaactgacacgattTTTTTCGCACCGCACTCGTTCGGACCCTGTTCGGACCCATTCGCATGCGGTCTGCGAatctccataggaaatgaatgacttccggtcatTTCGAAGCCGTATCGGAGATGATTTCaagtgccagtgtgaaggcggcgtaaagccctcctcaacagttgtgattggtgccaaGATtttgaaaaattggaaatgggtttgaattgtttcttgacctatttttgaggggggaataaacttcaatatttcgccgtgaaagcatgaactgtcctctggaggacatccaccagaccagcaggcgcctgtggattgttgtcggcagcggcaggcaagggaggcggggaggaagtagaaggatgcccggtcggggctgctagcctggctaaggaaactaccacacaattcgccactgcagagactcatattcaccaacgacagcacaaaaaatggatatatatgctacaaatacacatggaactgctgtgtgatgattattaccggagcctgtctgaacacactcactcatcccagacggcagctagcagctaagaggTTCCATTTCCGGACTCAAATCCTCCGGAGCTCGGTCTAACGATCCACTTCTTTGGTGACACTGGTGGAGGAGTTGAGCTGACCGAACCTCCCTGAGTTCCAGTGAAAACACCCTTCATTAAGAGTAGTAATATttgacagtgttgttgtgtgaaatatacaaatatactaCTAATAATGTTACCGTGTTGCCTAATGTGTGTGCGACTTTATTAGATGTCTGTTGATGTATTGCATGCAAGTTCGGAATTATGCATCACAAAGTTTGGATTGTATGATACATGCAGTAGCTGTAATATATTCATTTTGTACTTATTAACTAGCTGAGTTGCTAACGCTGTATCCTACATAAACATTTAAGGAAACTGCGGGGAACCTTTGGGATTTCTTTTACTACATGAGTAGATTTTGTCCCACAACATATtggaaataaaacatgaaacgtTACCTTTACTATTTCTACAGTTCCATTTCCAGAGTCAAATCCTCCAGAGCTCTGGCTAAGGATCCACTTCTTTGGTGACACTGGTGGAGGAGTTGAGCTGACCGAACCTCCCTGAGTTCCAGTGAAAACACCCTTCATTAAGAGTAGTAATATttgacagtgttgttgtgtgaaatatacaaatatactaTTAATAATGTTACCGTGTTGCCTAATGTGTGTGCGACTTTATTAGATGTCTGTTGATGTATTGTATGCAAGTTTGGAATTATGCATCACAAAGTTTGGATTGTATGATACATGCAGTAGCTGTAATATATATTGTACTTATTAACTAGCTGAGTTGCTAACGCTGTATCCTACATAAACATTTAAGGAAACTGTGGGGAACCTTGGGGATTTCTTTTACTACATGAGTAGATTTTGTCCCACAACATATtggaaataaaacatgaaatgttACCTTTACTATTTCTACAGTTCCATTTCCAGAGTCAAATCCTCCAGAGCTCTGGCTAAGGATCCACTTCTTTGGTGACACTGGTGGAGGAGTTGAGCTGACCGAACCTCCCTGAGTTCCAGTGAAAACACCCAGGAGTAGTAATATTTGACAGTGTTATTGTGTGAAAGATACAAATATACTGTACTACTAATAATGTTACTGTGTGTTTCCTAATGTGTGTACGACTTTATTAGATGTCTGTTGATGTATTGTATGCAAGTTTGGAATTATGCATCACAAAGTTTGGATTGAATGATGCATGCAGTATCTGTTCAGCGTATATGTAAGGAGACAGAGATGCCACAGAGGCGTACAGCACACAATAAAATGATGCCATTAGCCTGCACTTTAATTAGGAATTATATGTCAAGAACAAAGTCAAATTTGAAGATATCAAAAATAATGATACCAAAATTATCAATATTAGCCCATGCCCATTCAGAAAAAACAGTTCAATAACAAATATCAAAAGTTGATCTCATCTATGCACCAACCTGTGGAGATTTCGTGGGAGACTGAGGAGTGGGGCTACATGGTAACAGATTGTCGTCCTCCGTGCTGTTTGAGGGGAAAAACTTCCTCCTTGGCAAGGGAACTGGTGGGTTTGGCTGCAGTAAGACAGGGGGGTGACACATTTAAGCATTGAGGCTGCCAATCACAGGACTTTATTAGGAAAGTATTCATTCACTCtaattttgtgatttttgaAATTTCTCATTTCCCTAATTTGTCTGATGTTTAGATTATAAAGTTGCAGTTCACAACTTTAATTCAAAGCCTTTTTTTCAGAACTCTGAGCCTATATTAACCACTAAATAGTGTTCATGATTAAACATGATCCCAATTGGAGTCAAATTCCCAACCTGACTCTATCAAGATCCCTACAAAAGATTATATTGATTACACATCAGGAAAAAAAACCATTTAATTGCAACTGCTTTGTATATTGTTATCAAACTCATCTATACTGCAGTATTTATCAAGGTGGACTCTACCTGCTGAGATTCAGGACAACTGAACTGAATCGAGCTGGCCAAACACGTCAGACAAGATCTACAACGTCTTTGTAGTTGGCACACTCACAACTTGTTTACTATAGACGGGAGTGTGCCAAGTGTGTTCTTGCTTTCACTTTTGCCCTGAACAAATACCTTGATGACTGCTGTTTCATTTATACCTTTGCAAACTGGATATTACGTAGAAATAATGTGACGCAGATGAAATTGATTTGTTTCAAG
>TU5383
GCATCcggatgaccaactgacacgattTTTTTCGCACCGCACTCGTTCGGACCCTGTTCGGACCCATTCGCATGCGGTCTGCGAatctccataggaaatgaatgacttccggtcatTTCGAAGCCGTATCGGAGATGATTTCaagtgccagtgtgaaggcggcgtaaagccctcctcaacagttgtgattggtgccaaGATtttgaaaaattggaaatgggtttgaattgtttcttgacctatttttgaggggggaataaacttcaatatttcgccgtgaaagcatgaactgtcctctggaggacatccaccagaccagcaggcgcctgtggattgttgtcggcagcggcaggcaagggaggcggggaggaagtagaaggatgcccggtcggggctgctagcctggctaaggaaactaccacacaattcgccactgcagagactcatattcaccaacgacagcacaaaaaatggatatatatgctacaaatacacatggaactgctgtgtgatgattattaccggagcctgtctgaacacactcactcatcccagacggcagctagcagctaagaggTTCCATTTCCGGACTCAAATCCTCCGGAGCTCGGTCTAACGATCCACTTCTTTGGTGACACTGGTGGAGGAGTTGAGCTGACCGAACCTCCCTGAGTTCCAGTGAAAACACCCTTCATTAAGAGTAGTAATATttgacagtgttgttgtgtgaaatatacaaatatactaCTAATAATGTTACCGTGTTGCCTAATGTGTGTGCGACTTTATTAGATGTCTGTTGATGTATTGCATGCAAGTTCGGAATTATGCATCACAAAGTTTGGATTGTATGATACATGCAGTAGCTGTAATATATTCATTTTGTACTTATTAACTAGCTGAGTTGCTAACGCTGTATCCTACATAAACATTTAAGGAAACTGCGGGGAACCTTTGGGATTTCTTTTACTACATGAGTAGATTTTGTCCCACAACATATtggaaataaaacatgaaacgtTACCTTTACTATTTCTACAGTTCCATTTCCAGAGTCAAATCCTCCAGAGCTCTGGCTAAGGATCCACTTCTTTGGTGACACTGGTGGAGGAGTTGAGCTGACCGAACCTCCCTGAGTTCCAGTGAAAACACCCAGGAGTAGTAATATTTGACAGTGTTATTGTGTGAAAGATACAAATATACTGTACTACTAATAATGTTACTGTGTGTTTCCTAATGTGTGTACGACTTTATTAGATGTCTGTTGATGTATTGTATGCAAGTTTGGAATTATGCATCACAAAGTTTGGATTGAATGATGCATGCAGTATCTGTTCAGCGTATATGTAAGGAGACAGAGATGCCACAGAGGCGTACAGCACACAATAAAATGATGCCATTAGCCTGCACTTTAATTAGGAATTATATGTCAAGAACAAAGTCAAATTTGAAGATATCAAAAATAATGATACCAAAATTATCAATATTAGCCCATGCCCATTCAGAAAAAACAGTTCAATAACAAATATCAAAAGTTGATCTCATCTATGCACCAACCTGTGGAGATTTCGTGGGAGACTGAGGAGTGGGGCTACATGGTAACAGATTGTCGTCCTCCGTGCTGTTTGAGGGGAAAAACTTCCTCCTTGGCAAGGGAACTGGTGGGTTTGGCTGCAGTAAGACAGGGGGGTGACACATTTAAGCATTGAGGCTGCCAATCACAGGACTTTATTAGGAAAGTATTCATTCACTCtaattttgtgatttttgaAATTTCTCATTTCCCTAATTTGTCTGATGTTTAGATTATAAAGTTGCAGTTCACAACTTTAATTCAAAGCCTTTTTTTCAGAACTCTGAGCCTATATTAACCACTAAATAGTGTTCATGATTAAACATGATCCCAATTGGAGTCAAATTCCCAACCTGACTCTATCAAGATCCCTACAAAAGATTATATTGATTACACATCAGGAAAAAAAACCATTTAATTGCAACTGCTTTGTATATTGTTATCAAACTCATCTATACTGCAGTATTTATCAAGGTGGACTCTACCTGCTGAGATTCAGGACAACTGAACTGAATCGAGCTGGCCAAACACGTCAGACAAGATCTACAACGTCTTTGTAGTTGGCACACTCACAACTTGTTTACTATAGACGGGAGTGTGCCAAGTGTGTTCTTGCTTTCACTTTTGCCCTGAACAAATACCTTGATGACTGCTGTTTCATTTATACCTTTGCAAACTGGATATTACGTAGAAATAATGTGACGCAGATGAAATTGATTTGTTTCAAG
>XR_005638772.1
ttaccggagcctgtctgaacacactcactcatcccagacggcagctagcagctaagaggTTCCATTTCCGGACTCAAATCCTCCGGAGCTCGGTCTAACGATCCACTTCTTTGGTGACACTGGTGGAGGAGTTGAGCTGACCGAACCTCCCTGAGTTCCAGTGAAAACACCCTTCATTAAGAGTAGTAATATttgacagtgttgttgtgtgaaatatacaaatatactaCTAATAATGTTACCGTGTTGCCTAATGTGTGTGCGACTTTATTAGATGTCTGTTGATGTATTGCATGCAAGTTCGGAATTATGCATCACAAAGTTTGGATTGTATGATACATGCAGTAGCTGTAATATATTCATTTTGTACTTATTAACTAGCTGAGTTGCTAACGCTGTATCCTACATAAACATTTAAGGAAACTGCGGGGAACCTTTGGGATTTCTTTTACTACATGAGTAGATTTTGTCCCACAACATATtggaaataaaacatgaaacgtTACCTTTACTATTTCTACAGTTCCATTTCCAGAGTCAAATCCTCCAGAGCTCTGGCTAAGGATCCACTTCTTTGGTGACACTGGTGGAGGAGTTGAGCTGACCGAACCTCCCTGAGTTCCAGTGAAAACACCCTTCATTAAGATTCCATTTCCAGAGTCAAATCCTCCAGAGCTCTGGCTAAGGATCCACTTCTTTGGTGACACTGGTGGAGGAGTTGAGCTGACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5382 True 2761 lncRNA 0.40 2 12763447 12767103
TU5383 False 2301 lncRNA 0.41 3 12763447 12767103
XR_005638772.1 False 730 lncRNA 0.43 3 12764623 12766585

Neighbor

gene id symbol gene type direction distance location
LOC120565245 mpst,LOC102779789 coding downstream 8311 12752362 ~ 12755136 (-)
LOC120561165 NA coding downstream 12018 12727901 ~ 12751429 (-)
LOC120561143 NA coding downstream 43005 12704182 ~ 12720442 (-)
LOC120543530 tmprss6 coding downstream 59666 12688928 ~ 12703781 (-)
ift27 ift27,LOC102778458 coding downstream 310091 12439942 ~ 12453356 (-)
LOC120565993 LOC103371372,LOC104925466 coding upstream 32305 12799408 ~ 12802826 (-)
ncf4 ncf4 coding upstream 163029 12930132 ~ 12962722 (-)
baiap2l2b baiap2l2,LOC102782181,LOC102312770 coding upstream 210448 12977551 ~ 12989241 (-)
LOC120560412 NA coding upstream 225086 12992189 ~ 13019563 (-)
cbx6a NA coding upstream 277149 13044252 ~ 13068047 (-)
G3929 rps19bp1,LOC102787703 non-coding downstream 4358 12756475 ~ 12759089 (-)
G3926 NA non-coding downstream 11471 12751755 ~ 12751976 (-)
G3915 NA non-coding downstream 74636 12688441 ~ 12688811 (-)
G3914 NA non-coding downstream 75153 12687841 ~ 12688294 (-)
G3857 NA non-coding downstream 147293 12555947 ~ 12616154 (-)
G3935 NA non-coding upstream 16098 12783201 ~ 12784901 (-)
G3940 NA non-coding upstream 31708 12798811 ~ 12799231 (-)
G3995 NA non-coding upstream 291743 13058846 ~ 13065061 (-)
G4032 NA non-coding upstream 322089 13089192 ~ 13157217 (-)
LOC120567932 NA non-coding upstream 370955 13138058 ~ 13151623 (-)
c1qtnf6b c1qtnf6,LOC103374348 other downstream 103464 12642013 ~ 12659983 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other downstream 1770246 10966362 ~ 10993201 (-)
G3586 LOC104950333 other downstream 1858212 10899558 ~ 10905235 (-)
LOC120559237 LOC103359075 other downstream 2552143 9858080 ~ 10211304 (-)
G3373 LOC103359075 other downstream 2721443 9840590 ~ 10042004 (-)
LOC120561813 NA other upstream 37399 12804502 ~ 12832356 (-)
trnac-gca NA other upstream 93181 12860284 ~ 12860355 (-)
trnac-gca_1 NA other upstream 94591 12861694 ~ 12861765 (-)
trnac-gca_2 NA other upstream 95427 12862530 ~ 12862601 (-)
trnac-gca_3 NA other upstream 98865 12865968 ~ 12866039 (-)

Expression


Co-expression Network