ncf4 (ncf4)


Basic Information

Item Value
gene id ncf4
gene name ncf4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12930132 ~ 12962722 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805684.1
ACATTTTGAGACGCAGGCAGTCAGCGTGCAgcctgcggtgtgtgtgtgtgtgtgtgagtgtgctacTCCAGTCGTTACCAAAGCTGTCTGTGAGAGGCGCGTCTGTCCGCTCACAAGTTGAAGTTTCTCCGTCTGTCTGCAGTCAAAGCTGCGCCCAACATCATGTCGCTGCAGCAGTTACGAGACGAAAGCGACTTTGACCAGCTGCCTCATAACATCCCTATCAGCGCCACGATTGCTGATATTGAGGAGAAGAAAGGCTTCATTGACTACTTTATGTTTGTGATTGAGGTGAAGACTAAAGGAGGGAGTAAGTATTTCATCTATAGGAGGTACAGAGAATTTTTCAACCTCCACCAGGTCCTCGAGTTCAGATACTCTCCTGAAAACCCAGACAAACGTGGCCCCAACACCTGCATCCTGCCTTCTCTcccagGAAAAGTCTTCATGGGCAACAAGAGGGAGATTGCAGAGAGCAGAATCCCTGAACTCAGCACGTACATGAAGaGGTTGCTGGGTCTGCCAACATGGTTGTTGCTCGACGAGGCTATCAGGATGTTTTTCTACCAGACGGACCTGGACTGCCAGCAACAACCACGAGCCCTCAGGCGTCTCCGCCCACCTACCCGCAAAGTGAAGACAGTCAAACCAAAGATGGAACTCTTCTCCGCCCCCAGGGCTGAGGCGATATTTGACTTTCGCGGCAACGGCAAGGCGGAGTTGAACCTGAAGAAGGGAGAGGTGATCTTCCTGCTGCAACGAGTCAACGCAGACTGGCTGGAGGGCACCGTGAACAATCAAACAGGTATTTTCCCACTATCCTTTGTGAAGATCATTAAGCCCCTCCCAGAGAGTGACTCCGAAGGTGAGGGTGGAGGCCCCACCTACAGCTGTCTGCGCTGCCTCATGCTCACCCCCTCTGGAGTCAACACCAGAGATGTGTGTGTACAGGAGGACCTCACTATCCAGCCGACGTACAAGGACCTACTGTCTCGTATGAGGAACGTCTTCCAGGTGGACGACATCGCCATCAACTACCGCGACCACGAGGGCGACCTCATCCGTATCCTCGACGACGACGACGTCCAGTTGATGATCAGGCAGAGCCGCGATCAGCAGGGAAAAGTCAACAGACCTGTCAATCAGTTTCCGTGGGAACTGCATGTGACCATGGCCTCTGACCTTTCTGTCTACAATGTTGAGGCCTGAGAGTCGAAACAAAGGGAAGTAGAGAAGTCTTTTAGCATTagggttttcttttttattcattcaCAGTTACAAGTTACAAATGTCACTGCTGTTTCAGTTCGGTACATTTCACTTAGGAATAAACTAATTTAATAACATGTTTAATGCTTTAGTTTTGTTCTTGTTGGAAGTTGTTGCTGTACACTGGAGAGACAGAGCAGTACACCGATGGGTATGCGCAGTCTAAGCTTGGGAACCGCAGCTCAGAGCAAATAAAACGTTAAGGTACAAATCA

Function

symbol description
ncf4 Predicted to enable superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to act upstream of or within phagocytosis and respiratory burst. Predicted to be part of NADPH oxidase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive chronic granulomatous disease cytochrome b-positive type III and rheumatoid arthritis. Orthologous to human NCF4 (neutrophil cytosolic factor 4).

NR:

description
neutrophil cytosol factor 4

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K08012 NCF4, P40PHOX; neutrophil cytosolic factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805684.1 True 1483 mRNA 0.50 10 12930132 12962722

Neighbor

gene id symbol gene type direction distance location
LOC120565993 LOC103371372,LOC104925466 coding downstream 127306 12799408 ~ 12802826 (-)
LOC120565245 mpst,LOC102779789 coding downstream 174996 12752362 ~ 12755136 (-)
LOC120561165 NA coding downstream 178703 12727901 ~ 12751429 (-)
LOC120561143 NA coding downstream 209690 12704182 ~ 12720442 (-)
LOC120543530 tmprss6 coding downstream 226351 12688928 ~ 12703781 (-)
baiap2l2b baiap2l2,LOC102782181,LOC102312770 coding upstream 14829 12977551 ~ 12989241 (-)
LOC120560412 NA coding upstream 29467 12992189 ~ 13019563 (-)
cbx6a NA coding upstream 81530 13044252 ~ 13068047 (-)
LOC120564587 NA coding upstream 136177 13098899 ~ 13115142 (-)
LOC120564607 LOC103367033 coding upstream 141087 13103809 ~ 13106950 (-)
G3940 NA non-coding downstream 130901 12798811 ~ 12799231 (-)
G3935 NA non-coding downstream 145231 12783201 ~ 12784901 (-)
LOC120555888 NA non-coding downstream 163029 12763447 ~ 12767103 (-)
G3929 rps19bp1,LOC102787703 non-coding downstream 171043 12756475 ~ 12759089 (-)
G3926 NA non-coding downstream 178156 12751755 ~ 12751976 (-)
G3995 NA non-coding upstream 96124 13058846 ~ 13065061 (-)
G4032 NA non-coding upstream 126470 13089192 ~ 13157217 (-)
LOC120567932 NA non-coding upstream 175336 13138058 ~ 13151623 (-)
LOC120567935 NA non-coding upstream 188998 13151720 ~ 13152846 (-)
G4066 NA non-coding upstream 232324 13195046 ~ 13272174 (-)
trnac-gca_3 NA other downstream 64093 12865968 ~ 12866039 (-)
trnac-gca_2 NA other downstream 67531 12862530 ~ 12862601 (-)
trnac-gca_1 NA other downstream 68367 12861694 ~ 12861765 (-)
trnac-gca NA other downstream 69777 12860284 ~ 12860355 (-)
LOC120561813 NA other downstream 97776 12804502 ~ 12832356 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other upstream 27842 12990564 ~ 13028393 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other upstream 74548 13037270 ~ 13040280 (-)
G4168 NA other upstream 569031 13531753 ~ 13567266 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other upstream 1056180 14018902 ~ 14042510 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other upstream 1749422 14712144 ~ 14719102 (-)

Expression


Co-expression Network