RNA id: XM_039802943.1


Basic Information

Item Value
RNA id XM_039802943.1
length 2766
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120560419
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12990564 ~ 13028393 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTAACCTGGCATCCCTCCCTTCCTGTCTGAGCCCGGTAGCAGAccatacagatacagatagaaACAACAGGGTACAGGCTGACTGGATACTGGATAGAGTCCTGTCTTATTCCACtgggaaacagcagcagcagcaacgggGTGACAGAAAGCATCTTAAAAGAAAATAAGCTGCTCTCCTTCCCTTCGGTGTTCACCCTGCTCTCAGGAGCATGATGTTGCGTATGCGCTGTCGCTCCAGGACAATCTGTCTGTCCTTGGCCTTCATCACCATttccctccacctcctcctggcGCTTGTCTCTCTTCCCATTCACCACCAGTCCTGTGACCCCCCACTGCCACCCAGGACACACATCCTGAGAGACCTGGCACACACCAACTACACCACTGTGGGGATCAGGGGTTTAGCTGAGCCACCAACCGATACCACACAAAGATATTCTTCCAAGAAAGATGCCAATAAGGATGCTAAAGgtcacatgcaaacacactctGGCGTGGGCTTATCAGTGAAAGAAGGTAAATATGCCTCAGTGGACATGCCAGTCAATGTGGGTCGCTATGGCACCAACCGAGCTGAATCTGTGGAGTCCGGGCTGACAAAGCTGGAGGCGCTGTTTGACCATCCTCTTTACAATATGCCCGCCCCTCCTATCCCTGAGGAGGACTGGCTGTTGAAAGTGCAACCAAAGGCCAAGGCCAGTGAGAAGAGCTCCCAGATGTGGGTGAGTGCGAGCCAGGCAGACTACGTGGACGGCCAGTGgaacagcagcagtaacagccACCCTCCTTGGCTGCGTTTCCACCTGGGCATCTCCCGCTGGCAGCTGTACCCCCATCGTGACCCCAACATGGAGCTGCTGACCAAGCAGCTCGCCACGCACCGCGTTGTCAGCGCAGAAGTCTGGGGGGACGCAACTGAAGCTGGTGATGTCATTTCCCAACTATGGACAAGCCCTGTTCAAACCCATGAAgagagagatgaagaaaCCAATTACAACTTCTATTACTTCTCAGACTTTGAGAGACACAATGCAGAAATCGCAGCTTTTCACCTTGACAGGGTTTTGGGTTACAGGAGAATCCCACCGGTGGTAGGGAGGCTGGTGGATGTGGTCAAAGAGATCAAAGATGTCACCACCGACCGCAAGCTGGCCCGGACCTTTTTTACGTCCCCCGTGGGAAATGTGTGCTTCTACGGCCAGTGCTCCTACTACTGTTCCACAGAGCACGCTGTGTGTGGCCGCCCCAGAGATCTCGAAGCCTCCTTGGCTGTCATGCTGCCTGATCTCTCCCTGGCGGTCCGCAGGACCTGGAGATCCCCCTGGAGACGCTCCTACAGCCGCAGCAAGCTGGCAAAGTGGGAGTCAGAACCAGACTACTGTTCGACGGTGACAAAGACCCAGCCGTTCAACAAAGGCACAAGACTGGTGGACTTCATAGATTTGGTCATACTGGACTTCTTGATGAGTAACATGGACAGGCACCATTATGAAACTTTTGAGAAGTTTGGCAACAGTACTTTCCTAGTACACCTTGACAACGGGAGGGCATTTGGGCGTCACTCCAAAGATGAGCCCTCTATCCTAGCTCCTCTAGAACAGTGTTGCAGAATCCGTCGCTCCACCTGGCTACGCCTGCGtcttctgtctctgtcacaGTATCGTCTCAGTGATGTCATGAGGGCCTCGCTCTCCCATGATCCCCTTCACAGTGTAGCTCCACTGCTGTCGGAGCCTCACCTCGCTGCTCTCGATCGGCGCTTGAAAACTGTGCTGGAGACTGTAAGTCGTTGCCAAAAGAGACAGAGTGAagatggtggtgatggtggggTCCTCTATGATGACATTGCCTAATTGAAAGACATGGTCACACCTGCTGGGTAGGACAGTCTGTCTGTACCTCCCATATGTTATATGTACATGATTACATTTCACACTAGCACATGCAAAATGGTGTTAGCACTGATGTAGTTAAAGTCACAAGGACATATTCCAAGTTAAAGTAGAACAGGTTGTTTAATGGGACAATTCATTCGAGCCGCTAATGTAATAGAATTTCAGCATCCAAAAATTCATGATGTTTTGAAAATTGTAAGAGTTGAAAGAGTTTATAACGTTTATACATATGATGGTATGCAACAATGGAATGGATAGTTGGTCATATATTTAACGCAGTTTTAAAACTTGTACTTGTACGACACTACTTCCAATACTTCCTAAGAAGTATTGGAAGTAGTGTCGTACAAGTACAAGTTTTAAGTATTGGAAATTCtattttgaaatacaaaaaagttacattttgtCAAGTCTTTTGTCATTTACTTGAAACATTGGTGCATTCCAATGTGATGACAACAAAATTGGTGTGCTAgggttaaaatgtgtgtgtagtaaAGGAGATAGACTACATGTTTGAGATTCAGGTTAATTTGACTGGTGACGAACAATTTGACTTTACATTCTCTTAGTCTCTTTTTGCATTCTGTGAAAATAATATCACTACTTTTACTGTCTTGTCTTGACCTGGACTGATCTGATTCAAATGagattttgttttctgtttaatatacattttggcccattatgctatttagtatttttttttttccaatgcaAAAACAGTACTATAATACAATACACTATTACAGCATACCTTGGTATTACCCTTACATATTCCCTCGGTCCTttgaaaatttaaataattacagACACTGACAGTATGAAGTGTAAAGTTGCaacaaatgtattaaataataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5400 lncRNA downstream 182666 12804502 ~ 12807898 (-) False LOC120561813
TU5398 lncRNA downstream 191333 12798811 ~ 12799231 (-) True G3940
TU5393 lncRNA downstream 205663 12783201 ~ 12784901 (-) True G3935
TU5383 lncRNA downstream 223461 12763447 ~ 12767103 (-) False LOC120555888
TU5474 lncRNA upstream 8887 13037280 ~ 13040234 (-) False LOC120560438
TU5464 lncRNA upstream 30453 13058846 ~ 13065061 (-) True G3995
TU5521 lncRNA upstream 60799 13089192 ~ 13157217 (-) True G4032
TU5528 lncRNA upstream 109665 13138058 ~ 13148603 (-) False LOC120567932
XR_005640640.1 lncRNA upstream 119847 13148240 ~ 13151623 (-) True LOC120567932
XM_039805671.1 mRNA downstream 1323 12977551 ~ 12989241 (-) False baiap2l2b
XM_039805664.1 mRNA downstream 1323 12977552 ~ 12989241 (-) True baiap2l2b
XM_039805684.1 mRNA downstream 27842 12930132 ~ 12962722 (-) True ncf4
XM_039805083.1 mRNA downstream 158208 12804508 ~ 12832356 (-) True LOC120561813
XM_039812176.1 mRNA downstream 187738 12799408 ~ 12802826 (-) True LOC120565993
XM_039802959.1 mRNA upstream 8877 13037270 ~ 13040280 (-) False LOC120560438
XM_039802969.1 mRNA upstream 8877 13037270 ~ 13039959 (-) False LOC120560438
XM_039814014.1 mRNA upstream 15859 13044252 ~ 13068047 (-) True cbx6a
XM_039809720.1 mRNA upstream 70506 13098899 ~ 13115142 (-) True LOC120564587
XM_039809745.1 mRNA upstream 75416 13103809 ~ 13106950 (-) True LOC120564607
unassigned_transcript_56 other downstream 124525 12865968 ~ 12866039 (-) True trnac-gca_3
unassigned_transcript_55 other downstream 127963 12862530 ~ 12862601 (-) True trnac-gca_2
unassigned_transcript_54 other downstream 128799 12861694 ~ 12861765 (-) True trnac-gca_1
unassigned_transcript_53 other downstream 130209 12860284 ~ 12860355 (-) True trnac-gca
TU5319 other downstream 330602 12642272 ~ 12659962 (-) False c1qtnf6b
TU5471 other upstream 8887 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other upstream 8887 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other upstream 8887 13037280 ~ 13040234 (-) False LOC120560438
TU5715 other upstream 503360 13531753 ~ 13567266 (-) True G4168
TU6167 other upstream 1683810 14712203 ~ 14719102 (-) True LOC120555938

Expression Profile