RNA id: XM_039805083.1


Basic Information

Item Value
RNA id XM_039805083.1
length 5428
RNA type mRNA
GC content 0.42
exon number 17
gene id LOC120561813
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12804502 ~ 12832356 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACCTCCGAGCTGTCAAAAGCGTCGTCATGTCCCGTAGGAGTTCTCGCCTGGTGTCCGGCGGCTACTATAATTCAGACGAAGAATCGGATTCGAGTAGCGTGACAAACATATCTTACCGCGAAAACCCTGTCAAGGTTTTCAAGAAGAAGGCGGGGACCCGCAAAGCCGGCTCCCGTACCCCCACTAGAACCAATAGCAATGCGAGTTCTGCCAGCCCCGAGCCGCCCATCGCTGCAGGCCAGTATGACGGCCCCAGTTTTTCTTCCTTGAGCAGCCAGACCCAGCCGATCACGAGGGCGGTGCCCAACATCTCCACCACACCTACCCCTCGGCCACCCCTGACCCCATCATCAACCCGGAGCCAGACACCCCCATGCTGCCCCTCGGTACCTCCAGAGAAGAGCCCCTACGCTGGGCTCTGCAGCTCCAGCAGGCCAGGGTTACACCTCCAACCCAACCACAAGGAGCTGAGTCAGAGCGCTGTGGACAGCTCAGGGTACTCCTCCTCTGAGGGCCCTCACAGGAAGCCCACAGCCGCCACCGCCAGCAGCAGTGACAGTAGAATCAGCAGTAATAGTGGGGCTCCCAGTATTGGATACAGAGTCAGACGTGCCTTCTTTGGTCTAATGGACTCCGTCTCATTGATGGCCGCTGCATTACAGTCAAAAATAAtgcatctgacagctttagCTAATACTTCAGTCAGCGGTCGCATGAAGAAGGCTTGTGGTctgtttctcctcctcctcctcatcgtACTTTTATGTATTTGGTTCCTCCTTCCTTTGTTGACCTCCTACATCTCCCGCATGGCTGTCACAAAGACCCTGTCACAAACTAAACCCAAGAGTCAACCTGTTTCTCCTGccgctcctcctcctcaatCCAATATCATACATTCTACACCCGTGGTGGATCCAGCCGTCGTGTCTGCTGCTGTAGATGCGAGGATAGAACAATTTTTGGATTCAGCCGTTGTGTCTGCTGCTGTAGAAGCAAAGATGCATCGTCTTTTGgaggagcagcagctgaAGCAGGAACACATTCTCTCTCAGaTGAAGGAGAGACTACATCTGGACATGCAGGATGTGAAAGCCAAGCTGGAGGTTGTGGACTCGGAGAGTCGGCTGCGTCTGGAGCAGGAGGTTTATGGGTTGGGCAGGCAAATGGTGGATTACCAGACAGACAGCCACTCGGCCGCTGCCAGCCTCAGGCTCAGGATCCAAGCTTTAGAGTCCCAGAATGCAAAGCTGTCCCAGGAGTGGTCGTCCATCCAGCTGATGCCTCCTCCTGCCCCCTGTCCTGAGACCAGCACCACCCCCGTCCAAAACCATCTCACCCCAGAGCTCCAACAGGCCATGGAGAAGTGGCTCACTGAGCGCATCAAGGAGCAGGATGCTATCAGGCTTGGTGACAAAGGAGCTTCCTCCGACTGTGGACGTCCCATGGCTGACAAAATGGCCGACTTTGCATTGGAGACGCAAGGTGCCAGTGTGATCAGTACCAGGTGTTCAGAGACCTATCGTATTCGTTCAGCATGCGTGACCCTGTTTGGATTCCCTCTGTGGTACCCATCTGAAAGCCCACGCACTGTTATTCAGGGCTACCCGGTGCTGCTCCCAGGGAAATGTTGGGCATTCCACGGTGTCGAGGGGACTCTTgtcatctctctgtctcacccCATCACTATAACTCACGTGACACTGGACCACCTGCCGCGCTACAACTCCCCCACCGGCCGCATCGACTCCTCCCCCAAAGACTTTGAAGTCTATGGAATGAGAAATGACACAGAGGAAGGAACACTGCTGGGGACATTCACTTACGATGTAAATGGAGAGCCTACGCAAACATTCAAGCTGCCAAAACCCAGTGACGTGGTGTATCGAGTTGTGGAGCTGCGTGTCCTCAGTAACTGGGGACATGTTGAATACACGTGCCTCTATCGCTTCCGTGTGCACGGACAGATCGCCTCCACATTGTaattcatttttatatatatatatatatatatatatatatatatatatatagcaattttCTTCAGGttacataaacaaaacaaaaacaacaatacaacgacaatagaataaaatacaaGCAACAGAGTGATCGTAAAAACACCGGAGGATagaataaaggtaaaaaaatatataaaatggcCAGGGAGGGATGATAAAACCCAGCCCAGGGCACACTGGGGGTCAATAAATCCTTGATATAATTTGGAGCAAGGCCATTTCATTCTTTAAAAGTCATCAGTAAAATAGAATGGAAGTAATGTGTTGCTTTCTCTTGGTGCCTGTTCATATTGATGCGGCGGCGTTCTGCACCAGGTAGAGCCGGTGAAGGGACGCGTTATTTACTGAGCGGGCCGCGGCGGCTCATTCCAACATATCAGAAAGTACATTTGCAATGTGTGCTATTTAAGTTGAATTCAACGTTGTGGTCTGAGGTGCGTTCAGGACCAGATGCTACTGAAAAGATGTTTAGCGTTGAGTAATGGCACTCCTGTGTGTCGTGTTTTGGATTGCTTAATGTTAAAGTGACAGAAATCATAGATCGAGTTTTTTGTGCACACTTGGCTTTGAATACATGTACAGAATGAAGTGTAAAATATGTTTCTAAAAACCAAAAAGTATCTAGTAAAACCATTTGGGAGCATAATAGTTTTGGAAACTTTATGCTTTCAGTTATGTGAGAGTGCCACGGAAtaatttttaactttttgttaGTATTAATTATTACTATTTATCAGGTTTTTTTCTGCTTCGCATTAGTGCAGCGCACAAACCTACCCAGGAGCTCCTTACTGAAGTTACATTACTTTATACCAGTTGAGTGTTAAGCGCCTTTCTTCATGGTACTCTGACAAATGAAAAGGAAAGACAGtatttttaaccctcctgtttgacccattttgacccattttcaaaaagtttctatatcagaaatttgggtttctttcaaccaaatggtcaaaaaaaaaaaaaaaaaaaacgtaacgtGGACTGTTCCATCCAGCCATTACTCTTTATAattcaaataaatgatcagttcactactttcattgaatttgggtgtgtTATTCAATTGTATAgcgtttgaaaaaaatataaaaatgatcaAAGAATGttgggaaaaagtgacaaaaaagtttgggaaaaaaaacaagaaaaaggtaaaaaaaaaatttaaaaaagtgcagaaaaatcAGCAAAAACATCGACAATAACATCCAAaatttgtgacaaaaaaattggaaaaaaagtaaccaaaaaaagtgacaaaaacatcgggaaaaagGTGACgaaattttttgaaaaaagtgacaaaaacttaaaaaaaaataaataaaaaattgcatggtcgatgggaagacaacacaagggttaaatgaacTTACTGACCCTGGTTGTGAGCTTGCACCTCAAAGTTTCAACACATTTGATAAAGTGACATTAATtaggtttttcttttgttttttttaaacgtcgCTATGATATGTCCATTTTTTGGCCACATAATTAATTGCAATATTTAATATCTTTACAATACATGGATCTAGTTTGGGAAGTTTTCAGTCATACATGTTAGTTTCCTGCTATCTGAAATGATTGAAACAACTGTTTGTCATGACTGATGGGATGTACCATCCTTTGAACAATTGGTAGAAATTATACCGAGGGCAgcagtgaatgtttttttttttttaaatccgtGTTTGATTTGATATTCCAACGAAAGATAAAATATGCAGCTTTGTaaagtttcttttgttttctctttttagcAAGTTTGAACTCTTTTATTACCGGTACTTGAATACTTGAAAACCTCTTTTTCTAACCTCTTTGAAAGACGTCATGTTGACTTCATGACTTTCTACTTCCTTGTACATAACACTTTGATTTTGTATGagaaagaatgttttttttgttttttgtttttttcatttgtagAATGGGACTATTCTGGGTTATGAATTAATAACACGTGAATTTGATGAATGAGTAGCTGCTTGGAttccaaacaacagacaaactgtGTACGTCTGTGTCATTCAGTCATTTCTCATGTATTCTATTCGTTTGTTGAGATGGTGGAGagaatattataattattattatctaaTTATGAAGTGCACTAGAGGTGAATCCAGGTCAAGTCCATCATTTAAATATGTTCTAGTCTTAAAGGACATGGGACaaggaaaagagagacagaggaggctTTCTGTGTTTTCAGACAATTGTGATTTGGATCCTAACAAATTCAGTATcacaaattatttattatatatttctatattttgaTACAATGTTTGCAGGCTACATACTTCTCTAATCTTAGTGCAGCATGTAGTTAATACAAGAACTGATGTAGTTCTAATGCTTGATTATGTGTTACCATAAATTAGGAGCGCTTATAAATCTTTTAGAACCTCCTCTTGGTGGAAGCGCTTTTATGTAATCCAGTGGTTCTCATATTGGGGTCCGGGGACCCCCAGGGGTCTTTGAAGTggttccagggggtccccaaCAAAATCTAGAATGATCTATTTTCGGTTACACtttcacttgaaggtatctacacaACAGTgacatgtcactcttatgtagataccttcaagtaaagtgtttccctattttcactataatttcatccataagtaacacaatgacagattgTATGACTATTTTGCTCATGGATTTCATTCACTTTCTGCTGCGTGTCCTGTAGTAAAACATCTAAATGCAAAAATTCTATCAGGTAGGGGACCCTGGGACAAAGTCTTATCAGGTGGGGgtccgtggtctaatttgtgtcagtttaggggtccttgacgtgaaaaagtttgagaaccactgatgtCATACATTGAATTCAAACTTGATTGACTTTTGAGATGCAGATTAGGGTCAAATATGTTATTGGACACAGTACAATGTATAATGTCTCATGGAtttggagaaaataaaaaaacaacacttatgTTTCTTTCACTTGTATTACCTAAAAGAGGCGACacgtttcattttcatttcagaaaTTTGATGAACAGCCTGTACAGTCCTGAAGCTGTATCTTTGTGTATACGTGCTCTTTCTGGAACACACAATACAGGCAGTTTAATTCTCTCAGATTCCTGTTAGTGTGAAGCTGTACAAGCAACGCTGACGACAATGGTTAAATGCATCCCAGTTAATCAGGTTCAGCTTCTCCACGCACATCTGATAATGTATGTACTCTAACTTAAACAATACATTCAGACATGACCATTGTTGCcaattgttttctcttttaattaaactgattgATGTGTCAGAATTGGCCTGAGGTGTTCTCCAGAGTATTTGACTACCAATGCCTATTTGTAAGCCCAACTGAATGTTGGatttattcaataaaatattgttatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5398 lncRNA downstream 5277 12798811 ~ 12799231 (-) True G3940
TU5393 lncRNA downstream 19607 12783201 ~ 12784901 (-) True G3935
TU5382 lncRNA downstream 37405 12763447 ~ 12767103 (-) True LOC120555888
TU5474 lncRNA upstream 204924 13037280 ~ 13040234 (-) False LOC120560438
TU5464 lncRNA upstream 226490 13058846 ~ 13065061 (-) True G3995
TU5521 lncRNA upstream 256836 13089192 ~ 13157217 (-) True G4032
TU5528 lncRNA upstream 305702 13138058 ~ 13148603 (-) False LOC120567932
XR_005640640.1 lncRNA upstream 315884 13148240 ~ 13151623 (-) True LOC120567932
XM_039812176.1 mRNA downstream 1682 12799408 ~ 12802826 (-) True LOC120565993
XM_039810867.1 mRNA downstream 49372 12752362 ~ 12755136 (-) True LOC120565245
XM_039804149.1 mRNA downstream 53079 12727901 ~ 12751429 (-) True LOC120561165
XM_039804137.1 mRNA downstream 84066 12704182 ~ 12720442 (-) False LOC120561143
XM_039805684.1 mRNA upstream 97776 12930132 ~ 12962722 (-) True ncf4
XM_039805671.1 mRNA upstream 145195 12977551 ~ 12989241 (-) False baiap2l2b
XM_039805664.1 mRNA upstream 145196 12977552 ~ 12989241 (-) True baiap2l2b
XM_039802943.1 mRNA upstream 158208 12990564 ~ 13028393 (-) False LOC120560419
XM_039802924.1 mRNA upstream 158208 12990564 ~ 13028392 (-) False LOC120560419
TU5319 other downstream 144546 12642272 ~ 12659962 (-) False c1qtnf6b
TU4966 other downstream 1811307 10977643 ~ 10993201 (-) False nacc1b
TU4974 other downstream 1899273 10899558 ~ 10905235 (-) True G3586
TU4721 other downstream 2762504 10026270 ~ 10042004 (-) True G3373
TU4646 other downstream 3237280 9549981 ~ 9567228 (-) False LOC120559295
unassigned_transcript_53 other upstream 27928 12860284 ~ 12860355 (-) True trnac-gca
unassigned_transcript_54 other upstream 29338 12861694 ~ 12861765 (-) True trnac-gca_1
unassigned_transcript_55 other upstream 30174 12862530 ~ 12862601 (-) True trnac-gca_2
unassigned_transcript_56 other upstream 33612 12865968 ~ 12866039 (-) True trnac-gca_3
XR_005639486.1 other upstream 159311 12991667 ~ 13028393 (-) False LOC120560419

Expression Profile