RNA id: XM_039802969.1


Basic Information

Item Value
RNA id XM_039802969.1
length 1423
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC120560438
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13037270 ~ 13040280 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCTGGTCGAGTTTACAAACAAACCGTTATCTGTCGATATCGTCTGAAGGAGGAATAGCCATTTCTGGTGTCAACTACGACGACGTACTtgttgtagctagctagcaatttAACCTCTTCCCCAGAGTCGTGTTACAAAGTgttattaacgttagctagcgttaaGTTACACAGATGTGAGCTTGCTCTTAACTACTGgagTCGGAATGGCTGGGACTggtgagggaaagaaagaggaggcCGACTACAAGAGACTGCACAGCTTCCCTCTCATCAGGCATACGGACATGCCAGAGGAAATGAGGGTTGAGACCATGGAGCTTTGTGTTACAGCCTGTGAAAAATTTGCCACCAACAATgagAGTGCAGCGAAGATGATCAAAGAGTCCATGGACAAGAAATTCGGCAGCTCATGGCACGTGGTGATCGGCGAAGGTTTTGGCTTTGAGGTCACGCACGAGGTGAAGAACCTGCTCTACATGTTCTTTGGAGGGAGTCTGGCCGTGTGTGTATGGAAGTGCTCGTAGCATCTCCTCGCTGTCCCTCCTCCCCTGTGACGTGGTCACGGGGCTGGGAATGAACATTTGTGTTGCGACAGGTCAGTTTGTCCACACTACCAGCCACTGTGGCACATAATAAACAATTATTTGGAGCTCTTGTCCAGTTTTAAAAAGTGTAGTTGGCAGGGAAAAATAGTTGAAAGGGAACTTTAAAGTGCGGCAGTCACTTTGGCTGGAAGGCATACAAAAATAGCTTTCTGCCTCGTCTGTCACTtgcctttttctcttttgttttcaaCCCTCCGTCCGTCTCTGAAGCTGTATCCATGGTTCTAAACCTTTTGTGAGCGTGCATGTGCAAGTAAGTTCAACTTTTACAAACAATACAGCCAATCAGGGTCTCCAAAGTCCTTTTATCCTCATTCCTCTTCAGggagcacgtgtgtgtgtgtgtgagtttataCGTTTGTGTGTGCTGGACACACACTGTTTTTTGAAATGGCATTTCATCATCACCTTCCTCAGCAGTTTGTACAACAGTGAACTGTCCACACCATCCGTCACTTCTCACACCTTTCTCTCCAACCGCACTAATCTTTcaatacaatttttttattgaatgtaATATTTTTTATGTGTACATATTTTGAGGCGACTTGAAGAACTTCTTTTTAAAGATCAGTGTCATCTTCTTACAACTAAAGGCTCAGAGTCTCCTGAGCCAAACAACACTAAACCCGATCCACCTTTTCTCCCTCTAAAGGTGTTTGTAATAATCCCTAATAATATCACCGCACTGGGTGATATTTACAATGTGATTGTTTTCATGTTGATGACAGTTTTAATGATCCAGTGCAATGGACCATTTTGTGTGAATTGACTTGATTGTACAATAAACTCTGAAATGTGGTGAAATAGAAA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5400 lncRNA downstream 229372 12804502 ~ 12807898 (-) False LOC120561813
TU5398 lncRNA downstream 238039 12798811 ~ 12799231 (-) True G3940
TU5393 lncRNA downstream 252369 12783201 ~ 12784901 (-) True G3935
TU5383 lncRNA downstream 270167 12763447 ~ 12767103 (-) False LOC120555888
TU5464 lncRNA upstream 18887 13058846 ~ 13065061 (-) True G3995
TU5521 lncRNA upstream 49233 13089192 ~ 13157217 (-) True G4032
TU5528 lncRNA upstream 98099 13138058 ~ 13148603 (-) False LOC120567932
XR_005640640.1 lncRNA upstream 108281 13148240 ~ 13151623 (-) True LOC120567932
XR_005640641.1 lncRNA upstream 111761 13151720 ~ 13152846 (-) True LOC120567935
XM_039802943.1 mRNA downstream 8877 12990564 ~ 13028393 (-) False LOC120560419
XM_039802924.1 mRNA downstream 8878 12990564 ~ 13028392 (-) False LOC120560419
XM_039802933.1 mRNA downstream 8878 12990564 ~ 13028392 (-) False LOC120560419
XM_039802915.1 mRNA downstream 8878 12990564 ~ 13028392 (-) True LOC120560419
XM_039802905.1 mRNA downstream 8879 12990564 ~ 13028391 (-) False LOC120560419
XM_039814014.1 mRNA upstream 4293 13044252 ~ 13068047 (-) True cbx6a
XM_039809720.1 mRNA upstream 58940 13098899 ~ 13115142 (-) True LOC120564587
XM_039809745.1 mRNA upstream 63850 13103809 ~ 13106950 (-) True LOC120564607
XM_039809733.1 mRNA upstream 67347 13107306 ~ 13115140 (-) False LOC120564587
XM_039809726.1 mRNA upstream 67347 13107306 ~ 13115139 (-) False LOC120564587
XR_005639486.1 other downstream 8877 12991667 ~ 13028393 (-) False LOC120560419
unassigned_transcript_56 other downstream 171231 12865968 ~ 12866039 (-) True trnac-gca_3
unassigned_transcript_55 other downstream 174669 12862530 ~ 12862601 (-) True trnac-gca_2
unassigned_transcript_54 other downstream 175505 12861694 ~ 12861765 (-) True trnac-gca_1
unassigned_transcript_53 other downstream 176915 12860284 ~ 12860355 (-) True trnac-gca
TU5715 other upstream 491794 13531753 ~ 13567266 (-) True G4168
TU6167 other upstream 1672244 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 1861191 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 2386585 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 3305811 16345770 ~ 16347922 (-) True LOC120558720

Expression Profile