RNA id: XM_039795602.1


Basic Information

Item Value
RNA id XM_039795602.1
length 6940
RNA type mRNA
GC content 0.51
exon number 46
gene id nomo
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15994372 ~ 16034615 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCAGGAAGTTGTCTCTGGGAATGTGTTGTCTTTCTGACAGAGGAGTCAACTCCTCCCAGCTAAGTTAATTGTTAGCTAATAGTATCTAATAAATAGCTATTGTTATTCAGAAAAGGGAACGATGGAGGTCGACTCAGTCTTCTACACTGATCATAGCGGAAGAGTCCACAATAACCCACTGTTGGACCAGCTCCCCAGCTACCAGTCCCTGCTGTACCGCAGGAAGTCTTCCAATAGTGGCACCAAACGAAGGAGCAGCTCCAGAGGACGATCTGGTTCGTCTGGCAGTGGGAAATGGGGCGTGAGCACTGTCAGCCGACGTGAGGAGAAACAGAAAAGTCAGACGGTGCAGAGACCCATCAGGGAACTACCCACGACCGTGGCGGAGAAACGCAGACACGTAACACAGCGCTTGGAGGAGGCCCGAGAGCTCAGTAGTTTGAGACAGTTGAGGCAAAGCACCCGCAGGCATCTGCGGAGGCTGAGGGACGATGCCCAGGCATGGCTGAGCTGGCTGAAGCTCTGGAGGGGAGACATCCGCCTGATAGAGGGGATGTTCGGCACAGGGATCCTGTCTTACTTCTCCTTCCTGCGCTTCCTCGTCATGCTCAACTTGATCATCTTTGTGCTCATGTTCAGCTTCGTCATGTTACCCCTCATCATAGCCCCCCATGTTTCAGGGAATATCACCTACACCCAGAAAGTTGGAAGTGTGTGCAGTGAGTATTCAGGCACTGCCCGTCGAGGTCTGGTCAACTTTCATGAGCACATTACAGATCTGCTGTCTGGTGGAGGCTTTCTGGAACGGACCTATCTTTTCTACGGCTACTACAAGGTGGACAAAATACACTTTCCCAAGGCCACTTACAATTTGCCATTGGCCTACCTGTTGGTCACCATAGCCTACCTGTTCCTCAGTCTCATCTGGATTGTTAAAAGGTCTGCCACGGGATTCAAACGCAACCTGATTCAGGATGAGGATCGCTTTCAGAGCTTTTGCAACAAGATTTTTGCTGGCTGGGACTTCTGCATCACCAACGAGAACGCCGTGAGGCTGAAGAGAAGCAGTTTGCTGTATGAGCTCAGGACGGAtttggaggaggagaggatcaAACAGAAAATAGCAGATCGCACCCGCAAGGAGAGGTGTCGGATTTACCTCATCCGCCTCATTCTCAACCTGTTTGTCATTGGCGTACTGGCTGCATGCTTCTACAGCATTTATTCAGCCACCATCTTTTCCCAGAAAGTACAGATGGATAACATAAAGGAGAATTTCATTGTGGATCTCATCTATGAGTATCTACCCTCAATAGTTATCACCTTGGCCAACTTCGTCACCCCCCTCCTCTTCTCCGTTATCATCAACTATGAGGACTACTCGCCTGCCTTCGAGATCCGCTTCACTCTCATGAGGTTCAGTGGCTTCCCTCTTTGTTCACTCTTTGGGGGAAAGCGGGAGGTGTGGTTGATAGTGAATTACTGTGACTGTGGCCTGGCTAAGTGGTGGGGCCAGCAGGAGTTTGCTATTCCTCAAAATGTGTTAGAGATCGTCTACGGTCAGACCATCTGCTGGATCGGCACGTTCTACAGCCCGATGCTGCCTGCCATCTGCACTATGAAATACTTCTTTATCTTCTATATCAAAAAgGTCTCATTGATTAACAACTGCCGTCCAGCCACACGTCCGTTTAGAGCTTCCAGCTCCAACTTCTTCTTCCTGGCTGTGCTGCTGATAGGCCTGGCGCTGGCCTGTGTGCCTGTCACTTTTAGTATGGCACAAATAAACTCTTCCCACGCCTGTGGACCATTTGTTAATTACAACACCTCCTGGGAGGTGCTGCCAACTGCAGTATCCGAGCTACCAGATAGAATCCAAAAACTCCTCTTGGCTCTCTCATCAGAGGCCTTCGCCGTCTCCTTCTTTGTTGTTACATGTTTGGCCATGTTTTATGTGATTGCACTAGCTGGAGCTCACAAGAGAGTTATTAACCAACTAAGGGAGCAGCTAGCCATGGAGGGCCGTGACAAACGTTTCCTGATCCAAAAGCTGTGCCAGGCCCAGAGGCTGTCAGCTATCAAATCCCCAGTGTCCAAATCTCAGCCCCGCAGAAGCAGCCCCAGCTACCACACCAGCTTCTCCAACAATTTTAACGAAGCTGTGTTCCTGGCACACTCCCCTCCAGCGTCCTCCACACATCAGCTCAGCTGGTACGGAACCGGAGGCAGCGTGCTGTTGCTCGACTCTTCGAGATATCAGTCAGCCAAAATGTTGAGAATTACGATCCGGGCAGACGTGGGGGCCCTTTGGGTTTTATTCTGTATCACCTATTCCCAGTTATTGACTGTTTCGTCTGAGGACATTGTGGTGGCATGCGGGGGATTTGTGAAATCCGACGTTGAGATCAATTACTCTCTGATCGAGATTAAACTGTACACAAAACAAGGTTCTTTGAAATATCAAACGGACTGTGCTCCAATCAATGGCTACTTCATGATCCCCCTCTATGACAAGGGAGACTTTGTTTTGAAGATTGAGCCTCCTCTCGGGTGGAGCTTTGAGCCGACCAGTGTCGACCTCCATGTGGATGGAGTGAGTGACATCTGTACAAAAGAAGAAGACATCAACTTTGTTTTCACTGGCTTTTCAGTCTCAGGAACGGTTCTGAGTAAAGGCCATCTCCTGGGTCCGGCTGGAGTAGAAGTCAAACTCACCCCAGCAGGAACAGAGGAGAAACTCCAGAGTGTCGTCACACAGCCTGGAGGAAAGTATACTTTTTTAAAAGTACTCCCTGGAAATTATGACATCACAGCTGCCCATCCCTCCTGGACTCTGGAGCAGAGCACCACCTCAGTGCTCGTCTCCAATGCCAATGCCCCGGCCGCCGACCATCTGGTAGTCGGAGGCTACGATGTCTCGGGGGAGGTCCGCAGTGATGGAGAGCCCATGAAAGAGGTCACCTTCCTACTGTACTCTGCCGCAGTCAAGAAAGAGGACGTTGGTGGCTGTAACACATCCCCAGTGGATGGGGCAGATTCTGGGGACAGCTCCCTAGTCTACCTGTGCAGCTCTCTGTCCAGGGAAGATGGGACCTTCGTCTTCCCCTCACTGGCCAGCGGCGACTACACCGTGGTGCCCTTCTACCGGGGAGAACGGATTACGTTTGATGTCGCTCCTTCTAGGATGAATTTTAAGGTGGAACACAACAGTTTGAAACTGGAGCCCATCTTCCGTGTCATGGGCTTCTCAGTGACAGGCCGAGTTCTCAACAGCGTGGGTGGGGAGGGTGTCTCTGATGCCACAGTGTCCCTCAACAACCAGATCAAAGTGCTCAGCAAGGAGGATGGTTCTTTCCGGTTGGAGAACATGACTGCTGGTACCTACACCATCCGTGTCAGCAAGGAGCTCATGTTCTTTGAGCCAATCACAGTGAAGATCGCCCCTAACACACCCCAGCTGCCTGACATCATCACAGCAGGGTTCAGTGTGTGTGGCCAGATCTCCATCAGCCACTTGCCCGAGGGCATGAAGCAGCAAGGCCGCTACAAAGTTTCTCTGACACCCCCGGGCCAAGACAATGCCGCCAGCAGGACCATCGACTCTGATCCTCAGGGGGCCTTCTGCTTCCAGGCCAAACCTGGAGACTACAGTGTCCATGTGTCGCTCCCCGAGGCCGAGGTAAAAGCAGGCCTGGCTCTCCAGCCTCAGGCCCTGGAGGTCTCCCTTGTAGACCAGCCCCTCACAGACCTACTTTTCACCCAATTTATGGCTTCTGTCTCTGGAAAAGTCTACTGTTTAGCGTCCTGCGACGACCTGTCGGTAACCCTGCAACCAGTGAGTcggcagggagagaggaggacgGTGTCGCTGCCTGGCAACAGTGACATCCTCAGCTTCTCCTTTGACGACGTCTTACCAGGGAAATACAAAGTGAGTATTACTCATGAGGAGTGGTGCTGGAAGCACAAGTCCATAGAAGTGGAGGTTCTGGACTCCGACGTTGTGGGGGTGGAGTTCAGACAGATTGGCTACATCCTGCGCTGCTCCCTCTCCCATGCCATTACTTTGGAGTTCTTCCAAGATGGCAGCAAACCTGAGAACGTCGGCGTGTACAACCTCTCTAAGGGAGTCAATCGCTTCTGCCTCTCCAAGCCTGGTGTTTACAAAGTCACCCCTCGCTCCTGCCACCAGTTTGAGCAGGACTTCTACACGTACGATACCTCGGCCCCCACTATCCTGACCCTCACCGCAGTGCGCCATCACATGACTGGGCTCATCACCACCGACAAGATCCTAGACGTCACAGTTACTATCAAATCATCTATTGAGAGTGAGCCGGCGCTGGTGCTGGGTCCCTTGCGGAGCCTAGAGGAGCAGAGGCAGGAGCAGCAGCTGCAAGAGATTCAACTGCGCCGTCAGGAACGTGAGCGCCGCGCCGCCGAAGAGGACGGGGGTGCCAGGGACGATAGCCCTCCTATCCAAGAGAAAGCCGATGAACTGACAGGCCCCTTCCACTATGAGTTCTCCTACTGGGCCCGGGCTGGAGAGAAGATCACAGTGACACCCTCATCCAAGGAACTACTGTTCTATCCTCCTGAGGTAGAGGCAACTATCACTGGAGAGTCGTGTCCAGGTCGGCTGGTGGACATCGCAGGGCGTGCAGGTCTCTTCCTGGAGGGCAAGGTGTCACCGGAGCTACAGGGTGTGGAGATCTCCATCAGTGAAAGAGGAACTGCTGTACCGCTCGTTACCGTGGCCACCAATGAGATGGGAGCATACAGCGTGGGTCCGCTCCACAGCGACCGGCAGTACGACATCAGTGCCAGTAAAGAAGGTTTCGTCCTGAGTCCAGTGGAGGGAACCCTGGGAGATTTCAAGGCGTTCGCGCTGGCTGGTGTCACCTTCAAGATCAAATCGGAGGATGGTGTTCCCCTGTCAGGTGTCCTCCTGTCTCTGAGTGGAGGACAGTTTCGCTCCAACCTGGTGACTCAGGACACCGGCCTGCTCACCTTTAATAACCTGAGTCCTGGTCAGTACTACTTCAAGCCCATGATGAAGGAGTTCCGCTTTGAGCCAGCGTCTCAGATGATCACAGTGGAGGAGGGTCAAAACCTCAGTATCGACATAACTGGCATTAAGACTGCGTACAGCTGCTACGGAGCGGTGCAGTCTCTGAGTGGGGATGCAGAGAGGGATGTGGCCGTGGAGGCGGTGGGACAGGGAGAGTGTAGCCTCTACAGCGAGGACACCGTCACCGATGAGGAGGGTCGCTTCAGACTCAGGGGTCTGCTGCCGGGTTGCAAATATCTAATTCAGCTGCGAGAGGAAGGCAACGACCACATAGAGAGGGCCTTACCACAACACAGAGCTATAGAGGTCGGCAGTAATGACATTGAAGGGGTCAACATCATCGCATTCAGGCAAATCAATCAGTTTGACCTCAGCGGAAACGTCCACACATCCCCTGAACATCTGGCAACTCTATCGGTGAAGCTTTGCAAGAGTGACAATCTGGACAACCCAATCAACAGTGTCTCTCTGGGACAGTCCCTCTTCTTCAACTTCCCTCCTctggacagagatggagagAGCTATGTGCTGATGCTGTACTCCACGCTGTCCCGCTCCCAGTACGACTTCACTCTACCTCAGGTCACCTTCACCTCCAATGGCTACCACAAGCACGTCACACTCACCTTCAACCCCACTCGTAAAGTGCCTGACCAGGATGTTGCCCAGGGCTCCTACATAGCTCTGCCCCTCACTCTGCTGCTCCTGTTAGCAGCGTACAACCACGAGAAGGTAATCCCCCTCCTGTTGCAGGTGGTGAACCGCATCCAGGGAGTGAGGAGCATGGCCCAGGCCAGCGGGGAGAGCGCCGCTCTGGACGAAGCCAAACGTCAGGCCAAGAGACAGAAGGCCAGGCGCACATGAGGACACAACCACGGCTCACCTCCGACCACATCTTTGTTCACTAAAATGCACACTTGCACCCATGGTTACAGCCTCGGACAGCTCGTAGAGGAGATGCTGGTTCACTAGATAAACGTCTTTTAATGTTTGGAGTGGCGAATTGTGGGTGCTAGTGAACTATTTAGGGCACTAAGATGTGATATGGCCCCGAGTGAAGCCCAGCACGGACCACTCTACGCGCACTACCACCAACCTCATCAGCCGTTCAGATGCACTGGACTTATAGCtgacgattttttttttttttttttttttcccagaacACTCATTGTCTAAGAAaattgttaatatttgtgaTAGAGTTTGAGCCATTTTTATACCTTTTGTAATTTATCTAGGTCAACAAAAAAtcttttgcttgtgttttgaaAGGACTTGAATGCTTTTGATTTGAGTCCCAACATAGTTTAGGACTATCAGGCACTGTGGAAGATCATGAGTCTCTCACCTACCAGCATTTGGGTCAATTCAGAGAATACACAAAGGGGATTTTCATCAGAATGTGGCTTTGATAAGATCTAATCATGACTACCAGTATTAACTTAaggttatttaaaatgtatagttTAAATTGATTTCTATGGGATCAAATAAGGGTCGATAAGATTTAGAGCTTGACCAATGATTGTcagaaatcatttcaaaacttGTGGTATATCACGCTTGTAAGGGGAACTCCGCATGAGTTGTTTGTGAATGTGTAGAGAAGATTTGTGGTTAACATTTGAGAAgaacacatttttcaccagtgAGGGTGATAAACAATCACAagctttgtatttatttttaaatgtcatttccAGAATCTCCAAATCTTTTTGACGCTTATTTGACCCCATAGCTTTGATATTAAACAGAATCAGCCCCAAGCTGAATTGACTTCACAAATGCCATCACAAAGGTGGGATTGTGTAACTGCTAACTATGATTGAAAGACAGCCAAAGATGATCttataaatgcttt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6580 lncRNA downstream 287 15993604 ~ 15994085 (-) True G4860
TU6529 lncRNA downstream 212619 15781397 ~ 15781753 (-) True G4815
TU6513 lncRNA downstream 258194 15735789 ~ 15736178 (-) True G4799
TU6512 lncRNA downstream 258690 15735355 ~ 15735682 (-) True G4798
TU6511 lncRNA downstream 263416 15730655 ~ 15730956 (-) True G4797
TU6610 lncRNA upstream 13229 16047844 ~ 16048880 (-) True G4881
TU6617 lncRNA upstream 14773 16049388 ~ 16049629 (-) True G4886
TU6646 lncRNA upstream 160659 16195274 ~ 16257571 (-) True G4915
XR_005639170.1 lncRNA upstream 277314 16311929 ~ 16315887 (-) True LOC120558721
TU6843 lncRNA upstream 290400 16325015 ~ 16325323 (-) True G5068
XM_039804658.1 mRNA downstream 94971 15816338 ~ 15899401 (-) True LOC120561525
XM_039803969.1 mRNA downstream 308733 15428356 ~ 15685639 (-) False sdk1a
XM_039803962.1 mRNA downstream 308733 15428356 ~ 15685639 (-) True sdk1a
XM_039810016.1 mRNA downstream 569986 15419252 ~ 15424386 (-) False LOC120564766
XM_039810008.1 mRNA downstream 570022 15419252 ~ 15424350 (-) True LOC120564766
XM_039804834.1 mRNA upstream 16149 16050764 ~ 16058353 (-) True LOC120561637
XM_039805913.1 mRNA upstream 29934 16064549 ~ 16078343 (-) True sec23b
XM_039813974.1 mRNA upstream 211789 16246404 ~ 16283686 (-) True LOC120567135
XM_039799790.1 mRNA upstream 318026 16352641 ~ 16356941 (-) True wfikkn1
XM_039799845.1 mRNA upstream 322448 16357063 ~ 16362428 (-) True LOC120558696
TU6504 other downstream 564816 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 1090163 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1275270 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2427106 13531753 ~ 13567266 (-) True G4168
TU5473 other downstream 2954138 13037280 ~ 13040234 (-) False LOC120560438
TU6856 other upstream 311155 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 1676031 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 1796077 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 1809321 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 1845253 17879868 ~ 17881759 (-) True LOC120556582

Expression Profile