RNA id: TU6513


Basic Information

Item Value
RNA id TU6513
length 390
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G4799
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15735789 ~ 15736178 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctccttgcaaaacagctcgagctcagtgaggttggatggagagcgtttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttgtgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcaggga

Function

GO:

id name namespace
GO:0098797 plasma membrane protein complex cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6512 lncRNA downstream 107 15735355 ~ 15735682 (-) True G4798
TU6511 lncRNA downstream 4833 15730655 ~ 15730956 (-) True G4797
TU6420 lncRNA downstream 406498 15328188 ~ 15329291 (-) True G4729
TU6407 lncRNA downstream 414406 15278258 ~ 15321383 (-) False G4722
TU6408 lncRNA downstream 414406 15319305 ~ 15321383 (-) True G4722
TU6529 lncRNA upstream 45219 15781397 ~ 15781753 (-) True G4815
TU6580 lncRNA upstream 257426 15993604 ~ 15994085 (-) True G4860
TU6610 lncRNA upstream 311666 16047844 ~ 16048880 (-) True G4881
TU6617 lncRNA upstream 313210 16049388 ~ 16049629 (-) True G4886
TU6646 lncRNA upstream 459096 16195274 ~ 16257571 (-) True G4915
XM_039803969.1 mRNA downstream 50150 15428356 ~ 15685639 (-) False sdk1a
XM_039803962.1 mRNA downstream 50150 15428356 ~ 15685639 (-) True sdk1a
XM_039810016.1 mRNA downstream 311403 15419252 ~ 15424386 (-) False LOC120564766
XM_039810008.1 mRNA downstream 311439 15419252 ~ 15424350 (-) True LOC120564766
XM_039811990.1 mRNA downstream 320826 15410498 ~ 15414963 (-) True gpank1
XM_039804658.1 mRNA upstream 80160 15816338 ~ 15899401 (-) True LOC120561525
XM_039795602.1 mRNA upstream 258194 15994372 ~ 16034615 (-) True nomo
XM_039804834.1 mRNA upstream 314586 16050764 ~ 16058353 (-) True LOC120561637
XM_039805913.1 mRNA upstream 328371 16064549 ~ 16078343 (-) True sec23b
XM_039813974.1 mRNA upstream 510226 16246404 ~ 16283686 (-) True LOC120567135
TU6504 other downstream 306233 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 831580 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1016687 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2168523 13531753 ~ 13567266 (-) True G4168
TU5473 other downstream 2695555 13037280 ~ 13040234 (-) False LOC120560438
TU6856 other upstream 609592 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 1974468 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 2094514 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 2107758 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 2143690 17879868 ~ 17881759 (-) True LOC120556582

Expression Profile