G4722 (arpc1a,LOC102781765)


Basic Information

Item Value
gene id G4722
gene name arpc1a,LOC102781765
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15278258 ~ 15321383 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU6407
CGAGTGAGTtgtgtactgtaaatgtacaTCTTTATTTCATGCCTACCTCATGATCAGTTACATAGAAATCCTCCATCTTGTGTGGTTTTAGTGTAGTAGCTACAGAGCTTAGTGCTGGCCAGCCGTGACTCCACACAGAGTTCAGACAACTGCTTTCTCTCTCCACCATCAGATCCTATACAGCTCTCTACAGCCAACCAGCAACATGACCTCAGAATATCAATAACCCGGGTCATAACCTCACAATCACTTCACCTGCGGGAGAATATTTACTAGACCCAAGGAAGTAAAGCATCACGTCCTCCGTTCTACTAAACATTGATATTCAGAGATCATGTTAAGGTTGATCTGAGGTGACATACAGTCTGACTTTTGGATAAAACGCACCTTTTTTGTGTTCAACTTTTGGTACAGGAGGTTAgagaacataaaaacacacatttcacGCCACGTTTTTATACGTGTCAGAGGAGCTTCCCACTTTGACACCTGGTTAaccttcatttaaaaacaaacaaaaaaaatcaacagtgatgtcacacgTCAGCTCAGTGTGTGCGTGTAGTGTATGAGTGTACTttagtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU6408
CGAGTGAGTtgtgtactgtaaatgtacaTCTTTATTTCATGCCTACCTCATGATCAGTTACATAGAAATCCTCCATCTTGTGTGGTTTTAGTGTAGTAGCTACAGAGCTTAGTGCTGGCCAGCCGTGACTCCACACAGAGTTCAGACAACTGCTTTCTCTCTCCACCATCAGATCCTATACAGCTCTCTACAGCCAACCAGCAACATGACCTCAGAATATCAATAACCCGGGTCATAACCTCACAATCACTTCACCTGCGGGAGAATATTTACTAGACCCAAGGAAGTAAAGCATCACGTCCTCCGTTCTACTAAACATTGATATTCAGAGATCATGTTAAGGTTGATCTGAGGTGACATACAGTCTGACTTTTGGATAAAACGCACCTTTTTTGTGTTCAACTTTTGGTACAGGAGGTTAgagaacataaaaacacacatttcacGCCACGTTTTTATACGTGTCAGAGGAGCTTCCCACTTTGACACCTGGTTAaccttcatttaaaaacaaacaaaaaaaatcaacagtgatgtcacacgTCAGCTCAGTGTGTGCGTGTAGTGTATGAGTGTACTttagtgtgcgtgtgcgtgtgtgtgtgtgtgagagagtgtttGCACACACCCACAAGAGTGCGTTATGGTCTGATCAGTGCTTCAGCAGACACTCGATTAGGCGGTCAGTTATGTGTTACTGGCTGCGTCGCAGGAGCAGAGAGGGGGTGaggtggaaagaggagagggggaggggggggtcgAGGGGAGAAGTGAGGCCTGCTGCGtttcttcattcatttataAGATTTCTTCACATGATGCGGAGACCCTGGATAGAAGCTTCTAGACTcttGAAGTCCCAAATGGTCATTGCTCCATCGATGCCTGTGGTGCAGAACTTGCGACAATCCCTTTTATCTCCTTCATAGATCGACACTTGGGTGATGCTGTTCTGGTGCAGTGTGTCCAGGGCAGTGTTGCGGTCCTCGGTGGTGGCTCTTTTGTCCATGTTCCTGAAGCGCTCCATGGCAGAGATGTTCCTTTGGATGCTCTGCTTGGGGAGGTCAAGCTTTGACACAAATGTCAGCGCTCCACCATCGTCGCAACGGAACAGCATGGGGCAACAGTCGTGGCCCTAAAGAGAGCAGGCAACAGATTTAAAATGGCATTGCTTAC

Function

symbol description
arpc1a Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6407 False 658 lncRNA 0.43 2 15278258 15321383
TU6408 True 1176 lncRNA 0.47 3 15319305 15321383

Neighbor

gene id symbol gene type direction distance location
myo15ab myo15a,LOC102296698,LOC101486664 coding downstream 146381 15072782 ~ 15131877 (-)
alkbh5 alkbh5 coding downstream 207520 15065648 ~ 15070738 (-)
mief2 mief2,LOC102193621,LOC100697825 coding downstream 214318 15054451 ~ 15063940 (-)
smcr8b NA coding downstream 225546 15040847 ~ 15052712 (-)
sh2d3a sh2d3a,LOC104966618 coding downstream 402076 14856366 ~ 14876182 (-)
foxk1 foxk1 coding upstream 55817 15377200 ~ 15393673 (-)
LOC120564677 LOC104962345,LOC107388844,LOC108244157 coding upstream 74452 15395835 ~ 15401445 (-)
gpank1 gpank1 coding upstream 89115 15410498 ~ 15414963 (-)
LOC120564766 NA coding upstream 97869 15419252 ~ 15424386 (-)
LOC120561525 xylt1,LOC102778305 coding upstream 494955 15816338 ~ 15899401 (-)
G4713 NA non-coding downstream 14826 15199745 ~ 15263432 (-)
G4710 NA non-coding downstream 124112 15153544 ~ 15154146 (-)
G4668 NA non-coding downstream 224191 15053466 ~ 15054067 (-)
G4669 NA non-coding downstream 249120 15028486 ~ 15029138 (-)
G4670 NA non-coding downstream 265069 15012925 ~ 15013189 (-)
G4729 arpc1b,LOC100695691,LOC102293678,LOC101469153 non-coding upstream 6805 15328188 ~ 15329291 (-)
G4797 NA non-coding upstream 409272 15730655 ~ 15730956 (-)
G4798 NA non-coding upstream 413972 15735355 ~ 15735682 (-)
G4799 NA non-coding upstream 414406 15735789 ~ 15736178 (-)
G4815 NA non-coding upstream 460014 15781397 ~ 15781753 (-)
ubl5 ubl5 other downstream 374029 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 559156 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 1235748 14018902 ~ 14042510 (-)
G4168 NA other downstream 1710992 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 2237978 13037270 ~ 13040280 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 105161 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 1024335 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 2090670 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 2389256 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 2496124 17817507 ~ 17835761 (-)

Expression


Co-expression Network