alkbh5 (alkbh5)


Basic Information

Item Value
gene id alkbh5
gene name alkbh5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15065648 ~ 15070738 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795798.1
CCACTGAGCATGCGCTTATCTCTAGCAGGTTACACGAGTTTATTTTCAGCCTTTTTCTTGGACGCGATGGTCTAAATTGACCGTGGTAAAGCCTTGTGTGACTATAACAATGTTTTTCATGGACTCTTGGAGTTCAAACCTAAGAGGAAACGTCTCTGGAGCACCGAGGTTTGGCATTTAACGGTGACATGTGAAATGTTGCTGCGTGGTTTGACAGTATTTCCAGGCGGCAACGGACAGACCAAGCCAGGCTAgtttaagctagctagctagtagccaAGCAGCTCGGCTAGATATCGTTAGCCTTTCCGCTGGCTGAGCGTGTTGTAGTGTCGACGCAGCCTTTATCACAGCTCTGCTTGTTTGTTAGCATCCGGTAATACCATCTACAAATTGTCACGTTTCACACCAGACTGCTGTTTAAATGCACACACAGGACGGCGGAGAAACTAAGCTgttgttagctaacgttacttctGTGCGCTTGACATCGCTGTGAGTAAGTGGTCCCTTTAAGCTAACGACATCTACCATCAAAGACTCCCTTTGACATCAAGTCGGTTCATATTAACCAGTCAGTTAAAGCCGTGCTGACATGCAGCGCTGATACATGCTAACTGTTAGCTAGGAGCTCACGTCGCACTACACCAGTCATATTGGTTTGGCTGACATGGCAGCCAGCGGATACTCTGACCTGAGGGAGAAGCTGAAATCCATGACTCCACACAGAGAcgactttaaaaataaatacgtGGACGGGACGAGTAACGGCAGCAGCGGAAAAAGTCGAAAGCGCAAGTTCCGAGAGTCCGACGACGATGAATATGAGCACAGCGATGACAGCGCGGAGCACCGTGAGCAGGAGGCCAGCCGGGTGAAGAGCAGTATCCTGCAGAAGAGCATCTTCACACCGGAGGAGTGCGCCCTCATCGAGGAGAAGATCGACGACGTGGTTGCCAAAGGAGAGGCTGGACTTTACCGTGAGCACACAGTAGACCGGGCGCCCCTCCGCAACAAGTACTTCTTTGGGGAGGGTTACACGTATGGATCCCAGCTGGAGAAGCGTGGACCGGGCCAGGAGAGGCTGTACCGCAAAGGAGAAGTGGATGAGATCCCAAACTGGGTGCATGAGCTGGTGATCAAGCGTCTAGTGTCTAGTGGAGTGGTCCCAGAAGGGTTTGTCAACAGTGCAGTCATCAACGATTATCAACCGGGTGGCTGCATTGTGTCACATGTAGACCCTCTGCACATCTTTGCAAGGCCCATCGTCTCAGTGTCCTTCTTCAGTGACAGCGCGCTCTGCTTTGGCTGTCGCTTCCAGTTCAAACCGATCCGGGTGTCAGAGCCGGTGTTTGTCCTGCCTGTGAGGAGAGGGAGTGTCACAGTGCTGAGTGGCTACGCTGCTGATGACATTACACATTGCATCCGGCCCCAAGACATCAAGGAGCGGCGTGCAGTTATCATCCTTAGAAAGACCAGACCAGATGCTCCTCGACTGGACTCTGACAGCCTGTTGAGCTCTTCTCCTCCTTTAAAGAGACCCCCTCCTCTGAAAGCCAAACGCTCTCATCGCAAAGCAGAGCCTGATGCTGCTCACAGGCCGAGGGTACTAGAGATGGATAAAGAGGAGAACAGACATCCGTCACACTCCCGTCACCGTCGTCGCAGCATCAGCTCCGAGAACTACAGGAGACGTGGTCAAGCCTCCGACAAACACCGGGAGAGTTCAGGACGCAAAGTCAAAATGAGACGCCACTGAGCACTcctcacacatgtacacataaatatacccatTCTTTTATGTATTTCAGTATTGTAACTTTCTATGATCATCATTTTCTCGCTCCAGTTTTAGTCTGGCACGAAGAGCCCAGTCATCATGTTGTCTGCAATTTGATTTGAGCCTGATTTGAGTCTGAATTGTTTGTTTCTGGCAGACGAAGCTGGTGTCTTTGCTAAACACTACGGAACCTCAAGTTACTTACTACAGTTGGGCTCTGTTGTTATATTATCTTTAATTGAACGTTTCTTGTTTCTATGTCCATAAATACTTCAAAATGGCATGTATTTTTTGTAATGATGTACAGACTGCAAGAGCTAAAAGAAAGatgtatgtatggacttgtacAAAAGAAAAAGCTGAGCTGTAATCTAACTTGTTATAATATACAATATGTTTGTATAATCTTTGATTGGGGGAACTTTTATGCAGaaagaaacatgtttttttttttttttttttttttttttgcacctaCCTTTCTGATCTTCACCTTTTATTGTGCCATCCCAGATCTTTGTTCACTTCTGCGTCCCTGTTGCAGTTTTAAGTTGAAACAACGCATGTGCAGCGATGTTttctctgttatgatttgattctGCTGTATGGCTCATCTTGGTGGAGGTCAGTCTGGTGCATTAACTAAACCGATGTTTTATGGAGTGATGAAAAACTCAGGCCTTGTTTTACACTCCTGTTTCAGTTTGAAGTTGCTTGTTGTAGTGACAGAGGCCACGTTATTGCTGTTCTGTATTAAATCAAAATTTCCCTCATTTAAATTGGGTGATAATTTGGGTCAGACAGAACAAAAACCAACCTTATTACGTCTTGTTTAACTTGTGTCTAAACACGCGGCTGAGAAGAAACTCAatttccatatgtgtttgtccTTGAAATTTGCTGTGTAAATACAGATACATTTGTTTCTAGCTCCCAGTCAGCCATATTTGGCAGAGGTATGTATTAGTTCACCATTAGGTTAGTCTATAATTACACATGAACAAAAATAACCTCTGTTCAGAGGAGAAATGACTTTCTAAAAACAGAATGGGTTGTGTTCGTGGTTTTCGGAACACCTACAGTTGTGAACATGTTTGCAAAAGTTAAAAGTAATAGTCTGCAAGAGGCAAATACTGGAGCTCTCCAAACAGAACGGGACACTAACTTTGTGGACACaggtattttgtttttaagctAAAAAGGTGCTGGCTGACAGAAATAAAGCTGCAATTGTCTCCA

Function

symbol description
alkbh5 Enables oxidative RNA demethylase activity. Predicted to be involved in several processes, including RNA metabolic process; mRNA export from nucleus; and response to hypoxia. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to human ALKBH5 (alkB homolog 5, RNA demethylase).

NR:

description
PREDICTED: RNA demethylase ALKBH5

GO: NA

KEGG:

id description
K10767 ALKBH5; mRNA N6-methyladenine demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795798.1 True 3019 mRNA 0.45 4 15065648 15070738

Neighbor

gene id symbol gene type direction distance location
mief2 mief2,LOC102193621,LOC100697825 coding downstream 1708 15054451 ~ 15063940 (-)
smcr8b NA coding downstream 12936 15040847 ~ 15052712 (-)
sh2d3a sh2d3a,LOC104966618 coding downstream 189466 14856366 ~ 14876182 (-)
LOC120562191 NA coding downstream 240752 14811342 ~ 14824896 (-)
LOC120567499 NA coding downstream 258332 14805750 ~ 14807316 (-)
myo15ab myo15a,LOC102296698,LOC101486664 coding upstream 2044 15072782 ~ 15131877 (-)
zgc:77849 LOC104921184,LOC104966096,LOC102796782,LOC100695168,LOC101467750,LOC103369343 coding upstream 223133 15293871 ~ 15298838 (-)
LOC120561684 NA coding upstream 239960 15310698 ~ 15311959 (-)
LOC120557175 NA coding upstream 241694 15312432 ~ 15313905 (-)
foxk1 foxk1 coding upstream 306462 15377200 ~ 15393673 (-)
G4668 NA non-coding downstream 11581 15053466 ~ 15054067 (-)
G4669 NA non-coding downstream 36510 15028486 ~ 15029138 (-)
G4670 NA non-coding downstream 52459 15012925 ~ 15013189 (-)
G4663 NA non-coding downstream 65959 14999141 ~ 14999689 (-)
G4659 actbb,LOC102799139,LOC103383494,LOC102218394,LOC101168921,LOC108244554,LOC106519625 non-coding downstream 92457 14971380 ~ 14973191 (-)
G4710 NA non-coding upstream 82806 15153544 ~ 15154146 (-)
G4713 NA non-coding upstream 129007 15199745 ~ 15263432 (-)
G4722 arpc1a,LOC102781765 non-coding upstream 207520 15278258 ~ 15321383 (-)
G4729 arpc1b,LOC100695691,LOC102293678,LOC101469153 non-coding upstream 257450 15328188 ~ 15329291 (-)
G4797 NA non-coding upstream 659917 15730655 ~ 15730956 (-)
ubl5 ubl5 other downstream 161419 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 346546 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 1023138 14018902 ~ 14042510 (-)
G4168 NA other downstream 1498382 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 2025368 13037270 ~ 13040280 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 355806 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 1274980 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 2341315 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 2639901 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 2746769 17817507 ~ 17835761 (-)

Expression


Co-expression Network