RNA id: XM_039808907.1


Basic Information

Item Value
RNA id XM_039808907.1
length 1951
RNA type mRNA
GC content 0.52
exon number 11
gene id ldhd
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 40613516 ~ 40633735 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGATTACTAGCTAGTAGTTAGTGACCTTGTTCGGTGCCAGGTAAACCGGTAAAACATGTTGCTTGGCTTGACACCGAGTCGACGGTTGCTGTCTCACCGACATTGCCTCCTGCAGTGTCGCAGCATTAAATCAGAAAACACCGCCAGAAGTGCTGCCCTGGACAGCGTGCTCTCTGCGTTCAGGTCTAtatgtggagaggacggcgtcTCATTGGGTGAAGCTGTCAGACAGCAACATGGTAAAGATGAGTCTGTACACAgATGTTGTCCCCCAGATGTGGTGGTGTTTCCTCGTTGTGTGGAGGAGGTCAGCGCCCTGGCCAAGGTCTGCAACAACCACCGCCTTCCCATCATCCCCTTTGGCACTGGAACCGGCCTGGAGGGAGGGGTCAGCGCAGTCACgGGTGGTGTGTGCTTCAGTCTGAGGAACATGGACCAGGTTTTGGACATCCACCAGGAGGACTTTGACGTGACGGTGGAGCCTGGTGTGACTCGGAAGGCCCTGAACGCCTACCTGCGAGACACCGGCCTATGGTTTCCTGTTGATCCCGGGGCCGATGCATCTCTGTGTGGCATGGCTGCCACGAGTGCGTCTGGTACCAATGCAGTGCGTTATGGAACTATGAGGGAAAACGTTCTAAACCTGGAGGTTGTTCTGGCTGATGGGAACATCATACACACGGCCGGAAAGGGCCGACGTCCCAGGAAGACATCTGCAGGATACAACCTGACCAACCTGTTTGTGGGGTCAGAGGGCACTCTGGGGATCATCACCAAGACTACGTTGCGCCTGTACGGCATCCCAGAGGCCATGGTGTCGGCCGTCTGCTCTTTCCCCTCTGTGCAGGCTGCCGTAGACAGCACAGTGCAGATCCTACAAGCAGGAGTACCCATCGCTCGCATCGAGTTTCTGGATGATGTGATGATTGACGCGTGCAACAGGTTCAGCTCTCTGTCCTACCCCGTGACCCCGACTCTGTTCCTGGAGTTCCACGGCTCCGAGCGAAGCCTCGAGGAACAGGTCCACACAGCTGAGGACATCACTCAGAGTAACGGTGGTTCCGATTTTCAGTGGGCTCGAGATGCAGAAACTCGGAACCGGTTGTGGAAAGCTCGCCATGACGCCTGGTACGCTGCTCTGGCTCTCAGACCTGGCTGCAAGGCTTACTCTACagatgtgtgtgtccctctgtctcGACTGCCTCAGATCATAGTGGAGACAAAGGAGGACCTGATTGAGAACAGACTCACAGGTCCCATAGCGGGTCATGTGGGTGATGGTAACTTCCACTGTCTGATGGTGGTGGACCCCAACGACCCAGAGGAGCAGCGCGGGGTCCACCTCTTCACAGAGAGACTGGCCAGGCGAGCACTGGCCATGGACGGAACATGTACGGGGGAGCACGGAGTGGGCTTAGGGAAGAGAGCACTGCTGTGTGAAGAGATGGGACCCATGGCTGTCCAGGTCATGCAGCGTCTCAAGGACACGCTCGACCCAAAGAACCTGATGAACCCTGGGAAAGTTCTGCAGCCCAGGGAACTATAAACTGCATTGGAGTCAGAGGGAAAGTCACTAAACACAGAGAATGTCATGATCGGCTTGATCAGAGACTGATGTCACAATGAGATGGCACTTTTAGAGCATATTGCACTTGAAGTATTTCCTGTTAAAACAGGACTTCTGGAAGAGGCATAACAGGAAGGGATTACTCTAGTAAAAAAACAATAGGATATCAGTTAAGGCTGTGTTAAAATAATCTATTCTCCAATTAAAAGCGATGTTTTTTTGAGTAATCTGATATCGATGTATAAAATCCAGAAATCAACCTTTCAATTTATATGCCTTTTCACCTTAAATGTATAAGTAAAAGGTACTTCAATCAAACGTTTTGGTGGTCAATTcctaatgtaaacattaacctggtgcataattaaatatatttgagtgtt

Function

GO: NA

KEGG:

id description
K00102 LDHD, dld; D-lactate dehydrogenase (cytochrome)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122835 lncRNA upstream 80299 40526743 ~ 40533217 (+) True G91292
TU122830 lncRNA upstream 93729 40518365 ~ 40519787 (+) True G91288
TU122828 lncRNA upstream 104168 40508732 ~ 40509348 (+) True G91286
TU122827 lncRNA upstream 104808 40508138 ~ 40508708 (+) True G91285
TU122826 lncRNA upstream 106222 40507057 ~ 40507294 (+) True G91284
TU122916 lncRNA downstream 69446 40703181 ~ 40704428 (+) False gins3
TU122919 lncRNA downstream 79009 40712744 ~ 40712954 (+) True G91358
TU122924 lncRNA downstream 93411 40727146 ~ 40727418 (+) True G91363
TU122947 lncRNA downstream 209343 40843078 ~ 40860888 (+) True G91383
TU122949 lncRNA downstream 314020 40947755 ~ 40950042 (+) False smpd3
XM_039808792.1 mRNA upstream 27368 40559291 ~ 40586148 (+) True anpepa
XM_039809846.1 mRNA upstream 55652 40549248 ~ 40557864 (+) True si:dkey-12e7.1
XM_039809848.1 mRNA upstream 55652 40549569 ~ 40557864 (+) False si:dkey-12e7.1
XM_039809849.1 mRNA upstream 55652 40551459 ~ 40557864 (+) False si:dkey-12e7.1
XM_039809903.1 mRNA upstream 110689 40472848 ~ 40502827 (+) True LOC120564712
XM_039809224.1 mRNA downstream 2390 40636125 ~ 40700282 (+) True znrf1
XM_039807837.1 mRNA downstream 69662 40703397 ~ 40710433 (+) True gins3
XM_039807838.1 mRNA downstream 69665 40703400 ~ 40710433 (+) False gins3
XM_039807841.1 mRNA downstream 97024 40730759 ~ 40802151 (+) False ndrg4
XM_039807843.1 mRNA downstream 97024 40730759 ~ 40802151 (+) False ndrg4
TU122542 other upstream 739339 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 859851 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 1733614 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 1933429 38658366 ~ 38680087 (+) False G90686
TU122992 other downstream 319873 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 831969 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 835508 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 835508 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 835508 41469243 ~ 41495311 (+) False vps9d1

Expression Profile