RNA id: TU136376


Basic Information

Item Value
RNA id TU136376
length 212
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id LOC120564886
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38534565 ~ 38552304 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtatctctgtgtgcgCACAGCTCTCTGTGATAGCAGTAGGGATGGAATTGGAGGTATAGCTGGGTGTCAAACAGGAGGTCTGCAGATGCCGGTCCAGCTGAGAGCTGCGAGGTCCCTCCCTTTGACAGAGTATCCATTCAGAGTCAATGAGCTGGGTCAAAGCCTGCACGTCAGGCTGCAGCTCGGCCTAGCACTGGGGCGGTCCAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136362 lncRNA upstream 36161 38514372 ~ 38514831 (+) True G101245
TU136347 lncRNA upstream 87413 38460674 ~ 38463579 (+) True G101232
TU136322 lncRNA upstream 178017 38372564 ~ 38372975 (+) True G101211
TU136319 lncRNA upstream 180591 38368697 ~ 38370401 (+) True G101208
XR_005640226.1 lncRNA upstream 302680 38247528 ~ 38248312 (+) True LOC120565354
TU136400 lncRNA downstream 294081 38845284 ~ 38847544 (+) True G101278
XR_005640276.1 lncRNA downstream 304701 38855904 ~ 38858082 (+) True LOC120565661
TU136418 lncRNA downstream 320732 38871935 ~ 38872178 (+) True G101289
XR_005640312.1 lncRNA downstream 384948 38936151 ~ 38943212 (+) True LOC120565971
TU136523 lncRNA downstream 465508 39016711 ~ 39017673 (+) True G101365
XM_039811551.1 mRNA upstream 140775 38379216 ~ 38410217 (+) True kdr
XM_039811552.1 mRNA upstream 140775 38379216 ~ 38410217 (+) False kdr
XM_039810437.1 mRNA upstream 206329 38317933 ~ 38344663 (+) False clocka
XM_039810135.1 mRNA downstream 85606 38636809 ~ 38681396 (+) False lnx1
XM_039810137.1 mRNA downstream 85606 38636809 ~ 38681396 (+) False lnx1
XM_039810136.1 mRNA downstream 85642 38636845 ~ 38681396 (+) False lnx1
XM_039810138.1 mRNA downstream 96517 38647720 ~ 38681396 (+) True lnx1
XM_039810139.1 mRNA downstream 96517 38647720 ~ 38681396 (+) False lnx1
TU135875 other upstream 1060920 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 1418687 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1852123 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 2016453 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 326008 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 909243 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1009919 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1963890 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 2673888 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile