RNA id: XM_039810136.1


Basic Information

Item Value
RNA id XM_039810136.1
length 3402
RNA type mRNA
GC content 0.54
exon number 11
gene id lnx1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38636809 ~ 38681396 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTGAGGCTTTACCTGTCCAGGTGAACTGCTCTGCTGAAAGTGAACGTCGCTCATGAAGCCATGTAATTCCCCACACATCTCGGTTGCTAATGACTTCCTCACTGGATCCAACGAGACATCCTGAGTCCAAATGAGTATCCAGGAGGAAAGTATACAGCCTGAAGTTGCCATGGAGATGGCCGGAGCATCTGCTCCACCCCTTTCCCCTTCAGAGTTTGGACTGTTGTCTCCGCCCCCTGACCTGTGCCCCTCATGTGGCCACAGCCACCAGCTGGAGGAGAACCACGAGTACCTCTACAAAGACGAGGTGGATGACGACCTCATCTGTCACATCTGTCTGCAGGCGCTCATCCGGCCCCTGGACACGCCCTGCGGACACACCTACTGCGGGGAGTGTCTCACCAACTTCCTGCTGGAGAGCGACTTCTGCCCGGTGTGCCGCACGGCCCTCATGCTGCAGAGCTGCAGGAAGCCCAGCCTGCTGGTGCACAAGCTGCTGGACAAGCTTGCCGTGGCTTGCCCCTTCACCGACTATTGCACCGAAACCCTGGCCCGTGGTGAACTGGAAGACCACATCAAGAACAGGTGTAAAGGGGCCTCTCACTATGGGCTCTCAGCAGACAGGAAGCGACGCTCGCAGGAGGGCGAATGCACCGACAGCACGTCAGAACTCACCATCGCCACGCTGCCCAATGATGGCCCCGCCTCGGCCGCCGTGGCCCTCCTGTCAGACGAGCCCGGTCTGGTCAACCCCGCCTTCGACCCCAGCATGGAGGACAACAGTCAGTCAGGCAGCACGACCAGCCTGGCCGCCCGCAGCAGCTCCAAGAAGAGTGAGTTCCGAAATTTTGACCGTTCCTCAGTGAGGAGCCGTTCCTTCAGGAGGTTAAACCGGGCGTTCAGTGTCCTGCGGAGGACAAAGAGTGGCAACGCGGTGAGCAACGAGACGTCTGAGGAGAGAGACAATGCCAGGAATTCCAATGTGCCACAGGAAGTGTTGGCTCTTCCTCAGCTGCATCACCTGATCCCTGACGGTGAACTTACCAGCATTAAGATCACGCGGATGGTTCCCACAGACCCGCTGGCCATCAGCATCGTTGGCGGCAATGAGACCCCCTTGGTCCGCATCCTCATCCAGGACATCTACAGAGAAGGTGTCATTGCCCGGGATGGACGCCTGCTGCCTGGGGACATGATCCTGAAGGTTAACGGCATTGACATCAGCAACGTACCCCACTGCTACGCCGTGGCAACGCTCAAACAGCCCTGCCAGCTCCTCCGGCTAACCGTGCTCAGAGAACAGCGTTATCGCTACCGCTCGCACAGCCACCCGCACGGCCACGGGCACGGCCATGATGTCGCCGGGGGCCACCCGTCTCATGGCTTACCCCACCATCCTATGAGGGATGATAGCATCCACGTGGTCCTGAATAAATCCTCTCCAGATGAGCAGCTGGGCATTAAGCTAGTGAGGCGGCCAGAGGAGCACGGCGTCTTCATCTTCCACCTGCTGGAGGGCGGCCTGGCAGCACGCGACGGACAGCTGTGCATTGGCGACCGCGTGCTAGCCATCAACGGGCACGATCTACGTTACGGAGCACCGGAACACGCTGCTCTGCTCATCCAGGCAAGCGAGGAGGGTGTCCACTTCATCGTGTCTCGTCAGATCTGCCTGCCAACCCCAGACATCTTACAAGAAGCTCCGTGGGGCATGGACGGACCCCCACCATATTCCCCTGTGGATATAGAGCAGACACTGCTGGACTCTTGTCAGAAGCCTGCATGCTATGAGAAGACAGTTACTCTGACTAAGGAGCCGTATGACTCCCTGGGTATGACGGTGGCGGGCGGCATGTCCAGCCGAGGGTGGGACCTCCCTATTTACGTCACTAACGTGGACTCTGATGGAGTGGTCGGACAGGAGGGCTCCATCCGCAAAGgTGACATCTTGTTGAACGTGAACGGGGTGAACTTGACGGGGGTGACACGAGGCGAAGCCGTGGCCAACTTGAAGAACACCTCGTCTCCTGTCGTGCTCAAGGTCTTGGAGATGCGTCCTCCGGAGGAAAGCCTGCAAGAGTGCACGCTGCCGCCCTGTCTCACTCCCTCACCCACAGACAGCATCAAGAGCCCTGTGCCCAATGACGATTACTCGCCCCTGTGGGTGTCATGGCTGCAGCTACCCAGGCATCTCTACTGCTGCAAAGACATTGTCCTGCGGCGGAGCACTTCGGGCAGCCTGGGCTTCAGTATCGTGGGCGGTCAGGAAGAGGTCAACTGCAATCAATCCTTTTTTATCCGCTCCATCGTGGAGGGGACGCCGGCCTACAATGATGGCAGGATACGGTGCGGAGACATCTTGCTGGAGGTGAACGGGACGAGTACATGGGGAATGACCCACACGGCGTTGGTGCGCCTTCTAAAGGAGCTTCGGGGCAGAATCACCCTGACCATCGTCTCCTGGCCGGGCAGCCTGCTGTAGCAGGGCTCCAAGTCATCAGGCGCTGCTTCAGTGGCCCCGACCAAGGAATGTGGAAGGCAGAGCTTGAGACTAGCTGACCACCCTAAGCTTGCTGTGTGGATGAAGCTTAGAATAGTGCTATAGCTGTATGGATATCTCACTTCTGATGGACAGCTGAGACTTTGCCAGGAGTTTGAAGAGGGACAAACATGAGACTGGATTGTTACCAGAGGTTAACTTGCCCCCTCCAGGAACGCTGAACAGGGAGAATCCAGGCCTGGGACACTTCTGACTAGGATGTTGGTGTTATCTGTTTGGTTGTGAGGACATGATCACTCTCTGGCACAGCATCCAGTGAGTGGGGGGTGGGCGGATCGAGAGGAGACACGACACGTTGCCAATTCCAGTAGTTATATATTAGGGTATGCGTTAAGTTGGACTCACATTTCTTTACTGTAAATGTTGGGTGTCTAAAAAAGTACCGATCCAAGCACTTGTAATacgtttcttttgtttgtttgtggtatGGCCTTTAATTATAGGCTGCATTCTGTTTGTACTGACAGTAGTTGTCATCTTCATCTGTTGACCTGAAGACACATTGCCAAGTAGTAGTCtgtgttgagtttttttttttcttttcttttatttcagaaGCTATGGCTAAATTATCAAACCACTggcaataaaaatatatatatatataaaaaataatggatcAATGTGTTCattacatgttaaaaaaaaatttaattaggTGATATTGTGGAGGCCTTACTTATTTTCTtacttttaagaaaaaaaaaactgacttggTTTCTGTGTATCAGTGGATGGTCTGAGGCCCATCTGCTGTGGTTCTGTCTGTCACGCTTCGGCCTGTGTAGTATATCTGATGGTACATTTGGTTAAATGATCAATAAAGTCATTTGAAAAAGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640169.1 lncRNA upstream 84541 38534565 ~ 38552304 (+) True LOC120564886
TU136376 lncRNA upstream 85642 38550992 ~ 38551203 (+) False LOC120564886
TU136362 lncRNA upstream 122014 38514372 ~ 38514831 (+) True G101245
TU136347 lncRNA upstream 173266 38460674 ~ 38463579 (+) True G101232
TU136322 lncRNA upstream 263870 38372564 ~ 38372975 (+) True G101211
TU136400 lncRNA downstream 163888 38845284 ~ 38847544 (+) True G101278
XR_005640276.1 lncRNA downstream 174508 38855904 ~ 38858082 (+) True LOC120565661
TU136418 lncRNA downstream 190539 38871935 ~ 38872178 (+) True G101289
XR_005640312.1 lncRNA downstream 254755 38936151 ~ 38943212 (+) True LOC120565971
TU136523 lncRNA downstream 335315 39016711 ~ 39017673 (+) True G101365
XM_039811551.1 mRNA upstream 226628 38379216 ~ 38410217 (+) True kdr
XM_039811552.1 mRNA upstream 226628 38379216 ~ 38410217 (+) False kdr
XM_039810437.1 mRNA upstream 292182 38317933 ~ 38344663 (+) False clocka
XM_039810140.1 mRNA downstream 38523 38719919 ~ 38842671 (+) True scfd2
XM_039811582.1 mRNA downstream 185039 38866435 ~ 38880577 (+) True usp46
XM_039812003.1 mRNA downstream 220437 38901833 ~ 38907367 (+) True sgcb
XM_039810205.1 mRNA downstream 226190 38907586 ~ 38921011 (+) True LOC120564938
XM_039810206.1 mRNA downstream 270174 38951570 ~ 39014780 (+) True fryl
TU135875 other upstream 1146773 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 1504540 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1937976 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 2102306 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 195815 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 779050 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 879726 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1833697 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 2543695 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile