RNA id: XM_039811582.1


Basic Information

Item Value
RNA id XM_039811582.1
length 4540
RNA type mRNA
GC content 0.43
exon number 9
gene id usp46
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38866435 ~ 38880605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCTTCCTCACACAGCATGCTTGTTTCCTGGTCGTTGCTAACAACCTGCTGCCTGCAACTGGTCTGTCCGCCGTCCCCTCATACCTTGGCGGTTCCCTGCTGTAGGGTTTTGAGATGTGTGTAACAATGAAGCCGTGTCGACGCTGAGTGCAGCGGGACTCTCAGCTCCGTGCTGGCTGCATGGTGCTCCGCGTCTCTCTGCCCGCTTTCTGACGCTTGAGGTTTGCAGTCTGGCCTCCAGCCGCGGCTGCGAATTAACTTCATTTCTCAGCGTCGCCTTGCTctgaaatcatgttttttttataaagatggCGGCGAGGAGGACACTGTGAACTAAATGACTGTCAGAAACATCGCCTCCATTTGTAATATGGGCACCAATGCCTCTGCTCTGGAGAAAGACATCGGCCCGGAGCAATTTCCAATCAATGAACACTACTTTGGATTGGTCAATTTTGGAAACACATGCTACTGTAACTCGGTGCTCCAGGCTCTCTACTTCTGCCGGCCTTTCCGGGAGAATGTGCTGGCTTACAAAGCccagcagaagaagaaggagaaccTGCTCACATGCCTGGCTGACCTCTTCCACTCCATTgccacacagaagaagaaagttGGTGTCATCCCGCCCAAGAAGTTCATCTCCCGCCTACGGAAAGAGAACGATCTGTTTGACAACTACATGCAACAGGATGCCCACGAATTCCTCAACTACCTGCTGAACACGGTGGCCGACATCCTGCAAGAGGAGAAGAAGCAGGAAAAGCAGAACGGGCGCCTCAAGAACAACGGCACCGCCGTCACCACGGAGACCGAGACTGAGAACAAGACAGAGCCCACATGGGTTCACGATATCTTCCAGGGCACACTGACCAATGAGACACGCTGCCTCAACTGTgaaacgGTAAGCAGCAAAGATGAAGATTTTCTAGATCTATCTGTGGATGTGGAGCAGAACACGTCAATAACACACTGCCTCAGGGACTTCAGTAACACAGAGACGTTGTGCAGTGAATACAAATACTACTGTGAGGCATGCTGCAGCAAGCAGGAAGCACAGAAGCGGATGCGCGTCAAGAAGCTTCCTATGATCCTGGCACTACACCTGAAGAGGTTTAAGTACATGGAGCAGCTGCACCGCTACACCAAGCTGTCCTATCGAGTGGTGTTCCCCCTGGAACTCCGTCTGTTCAACACGTCCGGGGACGCAGTCAACCTGGATCGCATGTACGATCTCGTAGCTGTGGTGGTTCACTGTGGCAGCGGCCCAAACAGAGGCCATTACATCACCATCGTGAAGAGTCACGGCTTCTGGCTGCTGTTTGACGATGACATTGTGGAGAAAATTGACGCCCAGGCCATCGAGGAGTTTTACGGGCTTACCTCAGACATCTCCAAGAACTCTGAGTCAGGATACATCCTCTTCTACCAGTCCAGGGAGTGACTGGAGCTGGATCAGGGACACAGGAGAAGACTAAAATAGGATGAGAcctttttattgttctttttttttgttttaccttcAGCCTAACAGACCCAGACTCCTGCCATCTCCATCCCATCCTGTTCCCATCCTCCAAGTCCGACCTCGTGCCAACCCTCTGTCCCATCCCCAACCTCTGGCTTTACCTGTGCTtcatctctctcactctctctgtgtaACTTGCTTCTTGCCTTTTAGTCACCTGCATCTGGactgcactttaaaaaatgaaagCAAAAAAATGCTCAAcagcatgacaaaaacaaaaaaggagtcTATGTTCACATGGAGTCCCACACGCTTAGGTGTACACTGGTGGGAGGAGCCTGCAGAGGTGATTCTCTACCAGATACAAGGTTGGGTTGAAGGGTCTGGTGCAACACAGACTGTTGTCAGAAATTGTTGAAatcatttatatgtatataaggTCTTCTTCCATGATGCGTCACCCCTGTTTAGTTCCTTTGATTAGGGCTATTTTCCCCATCACCTTTGCTATGTTCCTGTCTCTGGCAGATGCATGAGAAGTGAATCAAGTTGGAGACAAACACTGTATAATATATTTCATGCATTTTCAATGGTTTAGAAGCAATATTTGAGCACTAATTAGAGAGCACTCACaagcttaaaaaagaaaagaaaaggtacGGTCAACAGCTGAAACTGTTGACAGTACAGAGGTTGTTTTGCCCCACAGAGAACCACTCTGTGAGCCGCTGTGTGTGCTTTAACTCATGTCAGATAATCAGATATGATCAACACTTAATCCAACATGCTCCAACACTACACACGAAAGGAAATCCTGCTGTTTTCTCTGTCGGATGGATCTCCATTCAAATCAGCTGAATCTTTATACGTTTTCATTCGGATAGAAAACCCATATGTATTGTACTTAacatatttatttctgttatttgTAGTGCAGACTGGTATATAATGAAGGTTAATGTGTAATATGGCTCTTTTGAGAGCTTTGTATGTTAAGACTCTTTTGTCTAAGCTCTGTGTGAAGGACACGGTGTATGTAATACACAACTTAAAGCTGGGGTAGGCAGTTTTGTTTTGCGTCATTGAGCAAAAATTCTAGAATAGTCTTTTAACATATTGcaattcaagtggtctgaggACTTTTGCACCTACTATTGGCTTTGTTTTTTTAGGCTTTAGAAAAGCCTAGCCTGTGACGatagactttggccaatcacattTTAGAGAGAGGGCGTTCCTAGTCGCTGTTTTACACATGCAGATGCACGTCTCTTCAGATGGTGAAAGCCTGATTCAATTGCGGAAGATCCTGCAGAAAAAGTTTCCAGCATTGGCAACAACTGCCTTCACTGCAAAGCAACCCAACAAAATTACAGCAGACTTATTAAAAAAAGTCTATAAGAGAGTCTGACAAACACAATAAAACGCACGTAAATATTGTCAAAGCATGTCGGAGATTGTGAGAAAATGTTGCGGGCTTTGAaattgtggtgtttttttgtttttttcatttccagaaaACTGCCTACCCCAGCTTTAATAGGACAGCTGAAAATAATTGTATCagttatatttttaattgttaaaaGTTTACATGTTAAATCATAAGATAAGACATGTTAACATGATGCAAGTGAGACCCAACCCTGAACTGCCCAATCTTTCAattgacaaaaaagtgaaaagagtGCAATAAGAGGTGAAGGTGTCCAGTGTGGGAGTTCCCAGTGACACTAatataaagtacatttaaatgtTAGTAGTAGATGTGTTTCTTAAGTGGCTGATTTCTTTCCcagtgctgtgtgtttgtgtggttgtaATATTCAAAGTAAATGCCCCCACCCCCTTCACCATGTGCAATACACACTACCTGCTAGGATGTTAGCTTAGCTACAGCGTTCTTTcctccattttatttttataaccaTACCCAGcattgtcttttctttctcttttcattcCCATGCTGAACTACAGCTTAGTAGTTTTCTCTTGGTTTGTCTCTGACTTTGATGCCGTAAACTGTGTGTGTCATATGTAGCACATTGGAATCCTAAGTCCCATAGGAGTCCCATTTAAGCCTTGATGTTGATTCATACGACATCCCTTGTACTGTAGATGTTTTTTCTCTTTGGCTCATTCCCCAGGGTCTGTGGCCACGCCCTGTGGAATAGTGTGACATCAAACTACTTGTTTTCATGTGAATGCCATTCCTATTTGCTGCACATCAGCAGAATTACCATTTCAAATGCATCTCATTATAAATAAGAGGTAGGAATAGGATTCATTTGCtagctttgtgtctgtgtctattcAAGAAAGGCAGAATTTTAAAGTGAAAATAGTGAAACTCTGGGTTTTGAATGCACTTGTTTCTGCCGTCTCTTCCGTTTAGTCTGTTACTGGGTGAAGTCACGAGGAATACGTGCCAAACTGGAGTCAATACTGACCATGCAACAGTCTTTAACAGAGCattattttctttgtaaagATACAGCTGTACATATTATGTAGAGAAACACTTCTGGAAAtaggaaaatatttttttaaagtgaagatctttaaaatgtaaagacactCATGGCAAATGATTTTAGCTTAATGCTGACCATAAAATGAAACCCTGTTAAGGAAATACTGTGCTATTTTACAATCACTCAATTACATAGTCAATCAGATTTGTCACCATctgtcatattttttattttatttttctgggtTAAACTGAGCCAGGATAGAAAACCGTAGCACATTTTAGACCTGcgtgagagaaaagagagactcTTAACGCGCCGATCTTCCATCAACACTTATGCACTCGCCCTCACTGGAACGCTCAGTCGTTGCACTTGGTCTGATATATCTTACTGTGATAGTGTTCTACCTAGGAGAGCTGGGATCTGTGTGAGGGAAGGAAGAGAAGAATCCAGAGTCTCCATCTAGTTGTAAACTGAAAGTGCACTTTATCAATGATGAGCTTCAATGCTTTAACATGAAGAACCACAGTTTAACGCACTCATTTTGAGTTATTTCTTCTGTTCAATAAAATGACTTTCAACTAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640276.1 lncRNA upstream 8353 38855904 ~ 38858082 (+) True LOC120565661
TU136400 lncRNA upstream 18891 38845284 ~ 38847544 (+) True G101278
XR_005640169.1 lncRNA upstream 314131 38534565 ~ 38552304 (+) True LOC120564886
TU136376 lncRNA upstream 315232 38550992 ~ 38551203 (+) False LOC120564886
TU136362 lncRNA upstream 351604 38514372 ~ 38514831 (+) True G101245
XR_005640312.1 lncRNA downstream 55574 38936151 ~ 38943212 (+) True LOC120565971
TU136523 lncRNA downstream 136134 39016711 ~ 39017673 (+) True G101365
TU136521 lncRNA downstream 137803 39018380 ~ 39023580 (+) True G101364
TU136609 lncRNA downstream 297667 39178244 ~ 39178746 (+) True G101427
TU136619 lncRNA downstream 309489 39190066 ~ 39190781 (+) True G101437
XM_039810140.1 mRNA upstream 23764 38719919 ~ 38842671 (+) True scfd2
XM_039810135.1 mRNA upstream 185039 38636809 ~ 38681396 (+) False lnx1
XM_039812003.1 mRNA downstream 21256 38901833 ~ 38907367 (+) True sgcb
XM_039810205.1 mRNA downstream 27009 38907586 ~ 38921011 (+) True LOC120564938
XM_039810206.1 mRNA downstream 70993 38951570 ~ 39014780 (+) True fryl
XM_039810727.1 mRNA downstream 194720 39075297 ~ 39130840 (+) True palld
XM_039810732.1 mRNA downstream 194720 39075297 ~ 39130840 (+) False palld
TU135875 other upstream 1376363 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 1734130 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2167566 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 2331896 36495484 ~ 36534539 (+) False smim24
TU136690 other downstream 579869 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 680545 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1634516 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 2344514 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 2345057 41225634 ~ 41225705 (+) True trnap-ugg_3

Expression Profile