RNA id: XM_039810307.1


Basic Information

Item Value
RNA id XM_039810307.1
length 3356
RNA type mRNA
GC content 0.50
exon number 21
gene id dnm3a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37005441 ~ 37029588 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGTACTTTCATTATTGGCTATGAAGTTTATCTGTCTTCTGCATAAGGGGATTGCCGAGTGATTGCCGCGCATGCGCAAAACTTGATTCCGTTAGCTGTCAGAGCAGAATGTTTTCCTCCCAGTCCATGGACCAAACTTAGCGCAGCGACAAGCGGCTAGCTTCGAAAATGTATCCAGCGGAGAACGGCATACTGCGAACATTCGGagttttaaaacaacaaaaatgtctatAGCGAACTGTTTTCGGAAACTTGAGCTCTGTGAGTACGAACTTGGACACTACTGTCGAAACCACACTTAGGGTAACGTATCAGCTGCTAAAGTTAACTACGGAGCTTTGTAAAGTTGGCACCGTCCTTCAggaagattattatttttaggtTTTGTACATATCAGTGATGAAAATGGCATACTTGTAAGTAACCATTAATTATGGTAGCTACTCTAACGACGGGTGTAGTGTAGAACCGGAGTAAAACAGGATTTAAAGGAGCTGGGCGGGTAGCCCGGCTGCTCCGTTGCGATGGGCAACCGCGGGATGGAGGATCTGATCCCGCTGGTCAACCGGCTTCAAGATGCCCTGAGCAGCGTGGGCCAGAGCTGCAGCCTCTACCTGCCGCAGATCGCTGTGGTGGGCGGCCAGAGCGCAGGCAAGAGCTCCGTGCTGGAAAACTTTGTGGGCAGAGACTTCCttccacggggttcgggaattGTCACTCGCAGACCTTTAATCCTCCAGCTGCTTAGTGCTAACACTGagTACGGTGAATTTTTCCATTGCAAGGGAAAGAAGTTCACAGACTTTGAGGAGATCCGCAAAGAGATCGAGGCAGAGACACGCAGACTCACAGGATCCAATAAAGGCATCTCCCCTGTCCCCATCAACCTACGGATTTATTCACCACACGtgctGAACCTGACTCTTGTGGACCTGCCTGGCATCACCAAGGTGCCTGTAGGCGACCAGCCGGCAGACATAGAGTACCAGATACGAGACATGATCATGCAGTTCATCTGTAAGGAAAACTGTCTCATCCTGGCTGTCACGCCAGCTAACACTGACCTGGCCAACTCTGATGCACTCAAACTGGCCAAAGATGTTGACCCACAGGGCCAGCGCACAATTGGTGTAATCACTAAGCTGGACCTGATGGATGAAGGAACAGACGCCCGGAACATTCTAGAGAACAGGTTGCTTCCCCTGCGCAGAGGTTACATAGGGGTGGTGAACCGCAGTCAGAAGGACATTGATGGGAAAAAGGATATTAAGGCAGCCCTTCTTGCAGAGAAGAAGTTCTTCCTTTCCCACCCGGCCTACAAACACATGGCTGAAAGCATGGGCACCCCATATTTACAAAGAATACTTAACCAGCAACTGACAAACCACATCCGGGACACTCTGCCAGCCTTCCGTACTCATCTGCAGGGCCAGCTTCAGGACTTGAATAAAGAGGCTGAAAAATGCAAACAGTTCAGTCCTGATGACCCTGGACAGAGAACCAAGACACTgctacaGTCAGTTCAGCGCTTGGCTGTGGACTTTGAGAAGCTAATCGAGGGCTCGGGCGACAGAGTAGACACCGTTAATCTGTCAGGAGGTGCCAGGATCAACCGAATCTTCCATGAGCGTTTCCCCAATGAACTggtcaagATTGAATTGGATGAGAGAAAGCTGCGGCGGGAGATCAACTATGCCATCAGAAACATCCATGGTGTTAGGACGGGTCTGTTCACTCCTGATATGGCCTTTGAAGCCATAGTCAAAAAACAGATATCAAGGCTAAAGGGGCCGTGTATTCAATTTGTAGACACGGTCAGTCAAGAACTAATCTCCACTGTGTACCAGTGTATCAACAagCTCAGTTCCTTTCCCAAACTGCAAGATGAGACCGAGAGAATTGTAACCGCTGAAATACGAGAGCAAGAGAGCAAATGCAAAGATCAGATCGTGTTGCTCATTGACATACAGCTTGCCTACATAAATACCAAACATGAAGATTTCATTGGCTTCACTAACGCCCAGCAGATGTACAACCAAAGCAACAAGAAGACTGCTGCAGGGATGGCAGGAAACCACGGTGCGGCCCCTCCTTCCAGACTCGTAGTCATACGCAAGGGCTGGCTGACCATCAGCAACATCGGCATCATGAAAGGTGGAGCCAAGGAATACTGGTTTATCCTCAGTGCAGAGAGCCTGTCCTGGTTCAAGGATGATGAGgagaaggagaagaagtaCATGCTTCCTCTGGACAATCTGAAGCTCCGAGATGTGGAGAAGGGCTTCATGTCCAGCAAATTTGCCTTTGCTATCTTCAACACCGAGTtaagGAACGTGTATAAGGACTACAAATGCCTGGAGTTGGCCTGTTACTCTCAGGAGGAGTTGGACAGCTGGAAGGCGTCTCTGCTACAGGCCGGAGTCTACCCTGAGAAAGTCACCGTGGACGGGCAGGGAAATGGAGCTCCTGAAAACTTCACAGACCCCCAGCTGGAGCGTCAGGTGGAAACCATTCGTAACCTGGTCGACTCCTACATGAGCATCATCTATAAGACCATGAAAGACTTGATGCCAAAGACCATTATGCACCACATGATCAACAGCGTGAAGGAGTTCATTAGCTCTGAGCTCCTGGCCCAGCTCTACGCTCTGGGAGAGAGCTCAGCGCTGATGGATGAGTCAccggagcagcagcagcaccgggaGGAAGTGCTCCGCAAGCACGCCGCCCTGAAGGAGGCGCTCGCTGTCATCGCAAAGttctccacctccacctgcaCCACCCCTCTGCCTCCACCTGTAGACTCCTCCTGGATACGGCCCTCCAGCCCGACACTCCCTAGAAACTCAGTGACCAGTGGCAAGCCAGCGGTTCGAGGCCATGCCCCATCTGTCCCTCGGGTGCATGCTCACACTCCTTCCCCGAGCACTGATGGCCTTCAGCCCAACCGTGCTCCACCTAGTGTGCCAAGGAGGCATCCTCCAGCTGTCCCAAAGGTCAAATAACATCTCTGCTCAGAACTCCATTACCCATGATCCTTCTAGCTGCTGCTCAGTGCTGCCCAGAGACACCCATGACCTGTGTGATGTGTAATCCAGCTGAAGCACTACGCTGGGCTTCTCTCTGACTCCTCTGGGAGCTGCTGTCTGCAAAATTCACTAAATCTTGAGCCTGTTTTGTACATAATATCGTCGGCCATAAATTGCGGAATGTGCTCCGCTGTCTGCAGACTCTTCCTCAAGTGCCTGAACTTTGTGTAAATAGAAATACTATTTTTGAGTTATTCTACTAAAATAGAATACACATGCATTATTTTCACTGTTGAATAAACACaaacaggttttattttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135718 lncRNA upstream 27279 36968687 ~ 36978162 (+) True G100726
TU135720 lncRNA upstream 31392 36935167 ~ 36974049 (+) True G100727
TU135750 lncRNA downstream 9660 37039248 ~ 37043566 (+) True G100738
TU135762 lncRNA downstream 17313 37046901 ~ 37047118 (+) True G100747
TU135764 lncRNA downstream 71199 37100787 ~ 37102889 (+) True G100749
TU135880 lncRNA downstream 169649 37199237 ~ 37199455 (+) True G100847
TU135879 lncRNA downstream 436586 37466174 ~ 37475077 (+) True G100846
XM_039810310.1 mRNA upstream 295 36993143 ~ 37005146 (+) True mettl13
XM_039810312.1 mRNA upstream 18480 36985858 ~ 36986961 (+) True rangrf
XM_039810353.1 mRNA upstream 47081 36932655 ~ 36958360 (+) False prrc2c
XM_039810338.1 mRNA downstream 17689 37047277 ~ 37107092 (+) True suco
XM_039810339.1 mRNA downstream 17689 37047277 ~ 37104257 (+) False suco
XM_039810340.1 mRNA downstream 17689 37047277 ~ 37104257 (+) False suco
XM_039810341.1 mRNA downstream 17689 37047277 ~ 37103895 (+) False suco
XM_039812393.1 mRNA downstream 78985 37108573 ~ 37114224 (+) True mysm1
TU135631 other upstream 306572 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 470902 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 470902 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 530246 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 776867 36227087 ~ 36228574 (+) False dsg2.1
XR_005640357.1 other downstream 102581 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 434326 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 1847623 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2430858 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 2531534 39561122 ~ 39565955 (+) False reps2

Expression Profile