RNA id: XM_039810340.1


Basic Information

Item Value
RNA id XM_039810340.1
length 4344
RNA type mRNA
GC content 0.54
exon number 23
gene id suco
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37047277 ~ 37107092 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCTACCCTCAACGGCAGTAGATGTTAAAGCCGAAAGAGAAGCAGACAACTGGTGTGGTCCGCAAAATGAAAATTAGCACGCCTCAAGTGTAGGGTTTAGCCACAGAAGACAGTCGTTTGCTCATTTGTAATTGACAAGAGCCTTCCAGCAAACAACAAGCTTGTATTCGGTGTATTGTGTAGCCGTCAAAGATTAGAAACAACCCCAAAAAGCGAGCGAGGATGTTGGTCCCCGCGGGAAGATAATGAAGAGGCTGCGCGTTTTGTTGGTGTGCCTCATTGTAGCTCTCCTGTGCTGGTACCCCAGTCAATATGTGTATTGCTCAGAGCAGAGCTTGTCTGGCCCTGGTCAGTCTGCGGGGGACAGAAACCTGGAGGACCAGAAGCAGGAGCAGGAGCAGGACTCCACGCAACacaagGTGTTGGAAGAATGGACGACACACACATCATACGATATGGGACTAGAGACGGAGAGAGCAGCACTAGAAAAGCTAGCAACACACAATGTGCTCCAAGAACCGACTGTGAATCCTCGGCAGGCTGAGGGAGAAGAGACCAAGCCTGACCCAGAGTCTGATACTGTACCTGTTGCCACTGAGCCAGAACCCCACCCAGACCCCCATGTTGACGAGGACCTGCAAACTGACACCCAGGACCATGACCAGGAGGTCCCTGTGTCCTCAACTCCAGAACCAGTCCCAGCACAGGGCCACGTGTCTACAGATGCCCCTGCCCCAGCAGAGATCGTCAGTGACGCCCCTGCCGCACAGCCCAGCCTGGACTCAACCTCAGCCACATCCCCAGATGAAGCTGAAAACGCACCTACCTCACAGAGCGAcgaccacacccacacagaTGTGGATGAGGCTGGCATAGAGGACCAGCAGTCAGGCCAGAGCCACACTTCTGGGGCTGAAGCAGAAGTCCAGTCTACTCCAGGCCATGTGGACCAGGAACAACCACAGCAGCAGGAGCTGGAGGATGGGCTGTCTGATTTGGACCAGGAAGGCAACAATTCTCAACACCACAAAGAACAGCAGGCAGAGCATGGCAGTACTGCCAAGGAGACCGATCCCTCAGTGCCCAGCAAAGAAGACATCCCCACCTTCGACGAGTGGAAGAAACAAGTCATGGAAGTGGAGAAGGAGAAAAGTCAGTCTCTCCATACCTCAACCAGCGGCACCCCCCATCTAGTGAAGAAGGTCCAGAAAAACTTCAAGAATAACTATGCCTCTGTGGAGTGTGGCGCCAAGATACTCTCTGCCAACAACGAGGCCAAGAGCACTTCAGCTATTCTCATGGAGAACATGGACCTTTACATGCTAAATCCGTGCAGCAACAAAATCTGGTTTGTGATAGAGCTCTGTGAGCCTATTCAAGTCAAGCAGCTGGACATTGCTAACTTTGAGCTCTTCTCATCAACGCCTAAAGACTTTTTAGTTTCCATCAGTGACAGATATCCTACCAACAAGTGGGTAAAGCTAGGTACTTTTCATGCCCGTGATGAGCGCATAGTCCAGAGCTTCCCACTGGATGAACAGCTATATGCTAAATATGTGAAGATGTTCATCAAGTACATAAAGgtTGAACTCCTCTCCCACTTTGGTTCAGAACACTTCTGTCCACTCAGTCTAATCAGgGTGTTTGGTACCAGCATGGTGGAGGAGTATGAGGAGATAGCAGATTCCCAGTATCCGTCAGAGAGACTGGAGTATTtagatgaagactatgactATCCAACAGGCTACCATCCTTCAGAGGACAAGGCCTCTAAAAACCTGCTTGGCTCAGCAACCaATGCCATCCTAAACATGGTAAACAACATTGCTGCTAATGTGCTGGGCGGAAAGCCAGAGCTGGAGGGTGGAACAGAAACAGGAGGTAATACGACAGCAAAGGAGGATGAAAAGGAGAACACAGAAGTTTCACCTACACCAGCTGAAACACCAAAGGACTCTGCAGAACTTGAGCCCGCAGAGCCAGAACATACAGCAACCCAGGAGGACTCAAATGTCTCCAGTGACTCTTCCACACCTTCCCCCTCACCACCAGACTCCCAAGAGGACAGACAGATTGTCACTCTggtagaagaggaggaggaggacgaagaGCCCAGACGGTCTACTGTCACCctgatggaggaggagggagaggaggaggaagagaagagagaggaggcgACGAGGAGGGAGGCAGACAGGAACCAGTGGGAGAGCCAGACCTACTGtcctttctcctccttctcttccctgTCTCTGTCCTGCATGGCCACCCTGCAGGAGCTCCTCCATCGCTGGTGCTCCGCCAGGCTGGCCAAGGAAAGACTCCGCAACCTTAGGCGGAGGCAGCTGAGAACTCAAACACAAACGCACCCTGATGCAAACACCCCTTCCCTCACAAACACACCTCCGCTGATCCCTGCCCCTGATCCCACACCTGTCAAAGAAGCTCTTCCCCTCACAGAAAAAGCTCCAGAGCCTGAGGTGCCTGTTAAGGGCCATGAGGGGAATGTCTTGGGTGAGATGCACACCACACATCCAAACACTCACACCCCTGAAGCACACACTCCAGAGCTCAAGCTCGTCCTAGAGCCTAGTAGAACAGCCACTATCCCCCCTCACAGTTTCTCAGACACCCCTAGCTCCCTGACAGTGCCTACCCCCTCCCATGAGGAGAAGCTGCTTCCTCCCATCAAAGACGCAGCCCTCGACCCAGTCCCCACTCCACCCCTCCAAGCTGCCACTATCCCAGAGACGCAACAGGCCAGCAGTGCCACCCCCACCCTTACTGTGAGCTCACTCCCACAGCCTTTGGCCTCCGAGACAGCCTCTCCTGGTATTCCAATTCCCCCTGGCAAGGAGCAGCCTGTTCAGCCTCTTCCCACTGCATCGAGGCCTGAAGATCTTATCCCCCCACCCACTGAACTGCCAGCACTCTCCCCACTGACTGATACAGACGAAGTAAAGGCAGGCACAGACAGTGGGGACTCGCAGAGACACAACGTCCAGACTTCTCAGACTCACGGGGAGCAGGGGGACTCGCTCACTCTCACCGGAGAAGACACCGTGGACGAAGACCTGTTGAGCACTATTGGAAATGGCAATGTCCACCGGACGGCTACAGACTTCTACGCAGAGCTGCAGAATGGAGGAGATTATAATGGTGGAGCGATGATCGGGAACGGCATGTTGAACGGGGGAGCGGTGCACGGCTCCAGCCAGAAGGAGAGCGTGTTTATGAGGCTGAACAACCGCATCAAAGCCCTGGAGATGAACATGAGTCTGTCCAGCAGATACCTGGAGGAGCTCAGCCAGAGATACCGTAAACAGATGGAAGAGATGCAGAGAGCGTTCAATAAGACCATTATCAAACTGCAGAACACCTCCCGCATTGCTGAGGAGCAGGACCAGAAGCAAACAGATTCAATCCAGGTCCTGCAGAGCCAGCTGGAGAACGTCACTAAACTGATGCTTAATCTCACCGCTACTGTCAGCCAGCTGCAGAGAGAGGTATCTGACCGTCAGAGCTACCTGGTGGTCTCTCTggttctgtgtctgtctctgggcCTCCTGCTCTGTCTGCAGTGCTGCCGcagctcctctccctctcccaacATCAACGCTGCTGCCCTTATCAAGAGCAACCACTACCCCAGCCCCAAGagATGCTTCTCCTCCTATGACGACATGAGCCTAAAGCGCAGGGTCGCCTGTCCACTTGTTCGCTCCAAGTCATTCCACTTGTCCTCTACAGAAGTAGGTCCAGATGACTTGTACATTGTAGAACCTCTAAGGTTTTCTCCAGAGAAAAAGAAAAAGCGCTGCAAGACAAAGTCGTTGGACAAGGTTGAGATTCTGAAGCTAGCCGATCCCTCTGCTCCACTCACAAACGGGGATCTCAACTGCAACGGCTTCCACCCGTGCCTCCCTGCGCCGCCATCaccacctcctcttcctcctccttctctcccactgcccccccctccctctgcaGAGGAGGTATCATCCCTGCCCACTTGCACCTCCAAGGAGTTCCCTTCAGAGACTAGCAGCTGCAGCTCGTCCACCCACTCTGAGGAGTCCTACACAAGCCGTCTCCCACCTCCCTCTCCCAGCCTGTGCAACGGACACGGCCCGTCTTTCTCCCTCCATCAGTCTCCCACCAAGTCCCGCCAGGAGAAGCGCTCGCTGAAGCGGAGGAAGTCGCGGCAGACGGAGCTGCAGTTCCCTACCATGCGGCGGGGAAGCCTGGGTTCTCTGCCCAGCCTGCAGCAGCTTATAAAGGGAAACAAGGAGATCAGCGTCGGGACCATCGGGGTGACCGCAGTCACCGGACATGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135762 lncRNA upstream 159 37046901 ~ 37047118 (+) True G100747
TU135750 lncRNA upstream 3711 37039248 ~ 37043566 (+) True G100738
TU135718 lncRNA upstream 69115 36968687 ~ 36978162 (+) True G100726
TU135710 lncRNA upstream 88947 36937165 ~ 36958330 (+) False prrc2c
TU135880 lncRNA downstream 94980 37199237 ~ 37199455 (+) True G100847
TU135879 lncRNA downstream 361917 37466174 ~ 37475077 (+) True G100846
XR_005640318.1 lncRNA downstream 464827 37569084 ~ 37574819 (+) False LOC120566005
XR_005640317.1 lncRNA downstream 466295 37570552 ~ 37574819 (+) True LOC120566005
XR_005640319.1 lncRNA downstream 466299 37570556 ~ 37574819 (+) False LOC120566005
XM_039810307.1 mRNA upstream 17689 37005441 ~ 37029588 (+) True dnm3a
XM_039810308.1 mRNA upstream 17689 37005442 ~ 37029588 (+) False dnm3a
XM_039810310.1 mRNA upstream 42131 36993143 ~ 37005146 (+) True mettl13
XM_039810312.1 mRNA upstream 60316 36985858 ~ 36986961 (+) True rangrf
XM_039810355.1 mRNA upstream 90300 36932655 ~ 36956977 (+) False prrc2c
XM_039812393.1 mRNA downstream 4316 37108573 ~ 37114224 (+) True mysm1
XM_039811820.1 mRNA downstream 23528 37127785 ~ 37141592 (+) True oma1
XM_039811470.1 mRNA downstream 52219 37156476 ~ 37488073 (+) False dab1a
XM_039811473.1 mRNA downstream 123337 37227594 ~ 37488073 (+) True dab1a
XM_039811472.1 mRNA downstream 123337 37227594 ~ 37488073 (+) False dab1a
TU135631 other upstream 348408 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 512738 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 512738 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 572082 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 818703 36227087 ~ 36228574 (+) False dsg2.1
XR_005640357.1 other downstream 27912 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 359657 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 1772954 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2356189 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 2456865 39561122 ~ 39565955 (+) False reps2

Expression Profile