RNA id: XM_039811775.1


Basic Information

Item Value
RNA id XM_039811775.1
length 2004
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC120565762
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 6335751 ~ 6345081 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGGAGGCGTCGTGACTCCTGCAGTTTGTTCATGTGTAATTGTCATCATCACTGGATGTGACAGCCGCGGGGACGCCGGGTCTATACAGTCACAGATTCTTGGCTCCTTCATCCAACATTTACGCGTTTTTAAAAACGGAAGGAAATTCCTGACACGTTTTCCGGAACGTTTCTTTCCTTGGATGACATTGCAGGCGGTTGTACTCTGCCgctgtattgtttttatttcacttttggagaaaaaaaagtcaaagagtGGTCGCACAAAATGCTTTCTTTATTCGCGCGTAAATGCCGCGCCGCCCGTCAAATGAATAGCGCGTTGTGCGTGTTTCGTCAGTGAAAGCTGCATGGGTAAGTTTTCAGAGGCACTGATGTGCTCCTGTCAGACGGAGACTTTTGGCATATGAGGGAAACTGttggattataaaaaaaaacaacaacacaatctGTTGCTTTCAAGCACGACAAGTCTGGAGAGTCTGCTGTTTTTCATTCTGGATTGTTTGCGCCTTGGTGACCGTGCAAATTCAAACCTCCCTGAGGTATTCACATGGtagaaacaatgtttttatgcaACACGAGTGCCATAAAGGACTGGAGCTATTTTCTGTCTCAGATTTTGCCTCTGATGAATAAAACTACAGGCTTGGTAAACATCGACAAAGCAGAGGATGTGACGACCACCATGGTGACAGCTCTGCAGCCGGACGGCGCCATGAGCGCAAGTAACCCGCCGCTCAACTCCAACCATACCTCGGGCATGGAGCACGTCTTTCAGTACTCTTATTCAGAGAGTGACCTGCTGTACACGGACTACCGCACACCTGCACGAGACTCCATCCCGCTGCCCAAAGCGGTTCTCTACCTGGTCATGGCTGcgctggtggtggtggcggtGGCGTATGCGATAGTTGGGCACCTGGTCAAAGATGTGGTAAATGAGTTTGTCGGTGGAGGCAGGTCGATGGTTGCTGAAGGGGACGGTGGTGAAAGCAGTGAACCAGAATGGGTGTTTGGCTCTCGTCGAGTTAGCAGCCGCAACAAGACAGAGATCAACTGCATCAGCAGCAACATGAACGAGATGAGCGAGTTGGGCGAGAGGCCCCGTCTGGTGGAGATGGGCTACATATCCCTGAACCACACTAACTGCCTGAGCTCCGTCAGACCGGAGGAGACAGTGGTCACCATAGACGAGACGTTACAGCAGCGACCTCCGGACACTCCCTCTGGGACTTAACCTGGGACCTTCTCACCTTtaccggagggaaaataaagcAGCGCGTCAGCCTGCTTTTGTTGTGCAAGTGGATTTACAAGTCTGTCATGAATCGAAGCTCTATCCACTCTTTTCTCACCTGTAGGTGGGCTGTAATACCTGCAACTTGGGAGCCAGAAGGGACTTTGAATTGTCGGCCATTGCTGGAACATTAGAAGCATCGGATGCTGATGTTTGTATCTGATTGGACTGCTTTCTGCGGAGGTGACGAGAGTGGACAGCCGCAGCTGTTTTTGGACAAGCAGGCAGAAAACaacaagtgtttttttgttgtcatttttgttcTCATCGTGCTGTCCCTTTTTTCAAGTGACCCCCTTGTGAAAATACCACCCTGTGGTACATGCACTTCACTTTAACCACTAACAGTATGTAATCACTCTAAATATAGGATACACGCCGGTCAATGCTTATTGTAATGTTGCCGCTATAGCACGGTTAAAAACTTCGCCTTCATAAAAACAATCACATCagcaactttttttatttccctggTTGCTGTGAGACACTCAAAGATTTTTTCGTAATTATTGTAAAGTTTATATCAAGCACCTCTAATGACACCGGGAAGGCtacaaatgttcttttttttgttctcacAACCcgttgataaaatgaaatgtattttgtagTTTCATGGTATTAGCTTGACGTGAACGAGCGCTAAATCACCTTTAAGAGCTATGattgcaaaaaacaaaacttaaaaGTATCAAAGccattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126357 lncRNA upstream 93593 6241195 ~ 6242158 (+) True G93644
TU126350 lncRNA upstream 120016 6215068 ~ 6215735 (+) True G93640
TU126316 lncRNA upstream 284231 6035369 ~ 6051520 (+) False G93613
TU126314 lncRNA upstream 288029 6035369 ~ 6047722 (+) False G93613
TU126313 lncRNA upstream 296903 6035369 ~ 6038848 (+) True G93613
TU126433 lncRNA downstream 45075 6390156 ~ 6398997 (+) True G93700
TU126449 lncRNA downstream 244122 6589203 ~ 6589653 (+) True G93713
TU126505 lncRNA downstream 491510 6836591 ~ 6836818 (+) True G93758
TU126542 lncRNA downstream 531070 6876151 ~ 6876493 (+) True G93790
TU126543 lncRNA downstream 534722 6879803 ~ 6880081 (+) True G93791
XM_039811499.1 mRNA upstream 45632 6262220 ~ 6290119 (+) True tut4
XM_039811753.1 mRNA upstream 264504 6067683 ~ 6071247 (+) True LOC120565748
XM_039811550.1 mRNA upstream 306558 6002811 ~ 6029193 (+) True LOC120565642
XM_039812502.1 mRNA upstream 848866 5378351 ~ 5486885 (+) False mast2
XM_039812355.1 mRNA downstream 9811 6354892 ~ 6381598 (+) True rhpn1
XM_039811997.1 mRNA downstream 282561 6627642 ~ 6641120 (+) True cyldl
XM_039810252.1 mRNA downstream 326990 6672071 ~ 6723277 (+) True ghrhrb
XM_039810253.1 mRNA downstream 326990 6672071 ~ 6723277 (+) False ghrhrb
XM_039811272.1 mRNA downstream 620466 6965547 ~ 6971300 (+) True si:ch211-191a24.4
TU126347 other upstream 121734 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 295632 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 1622566 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 2038341 4284902 ~ 4297410 (+) True LOC120565391
TU126420 other downstream 9816 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 1004729 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 1553591 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 1892289 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 1892289 8237370 ~ 8254575 (+) True G94073

Expression Profile