RNA id: XM_039812496.1


Basic Information

Item Value
RNA id XM_039812496.1
length 7550
RNA type mRNA
GC content 0.59
exon number 45
gene id LOC120566192
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 5024510 ~ 5201875 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcagcagcagcagcagcatcatccCTCTATCTCTGTGACTCCAGACTGAGGGGCTAATCGGGGGATGACTGGCGGATGGATGCGGACCGTGATCGCGGCTGGAAAGACGGATGGTTAATTAAAGGATACGCCGGTGATCCGGGGGATGTGCGCGGAGGAGCCCACATGTCGACCTGATTAGGAGAAGATGGAGAGGGGACAGCTGCTGTCACCGCCACACACAGCACTATAGACAGCCACTGAGAGGCACTGTGGTGCAGAGAAACGAGCCAGGCCGAAGAGCGTCGGACCTATGATGGATTTCTCGTGTGATGAGATGAATAAAGGCCCACTGGTACAGATGCACAGCCTCAGAGAGTTTGAACAGCACCTGAACGACCTGAAGAAGGAGAACTTCAGCCTGAAGCTCCGGATCTACTTCCTGGAGGAGAAGATCCAGCAGAAGTTCGAGGAGAGCGGCGATGACGTGCACAAGAGGAACATCGAGCTGAAGGTTGAAGTGGAGAGTCTGAAAAAGGAACTCGAGGAGAAAGAGCAGCTTCTGGACAAAGCTCTGGCGACGGCAGAGAGCCTGTCCAATCAGAATGAAGCTGAGCTGCAGCGCCGCCTGGCGGAGCGACAGGAGGAGATCGTCCACATGCAGGAAATCCTCCAAACCAAAGTTCAGCTGCTACaagagGAGGCGGAGCTGGCGCGGGGGGAGGCTGAGCGGATGGCCTCGCTGGCCGACTCCGAGGCCCAGCGCCGCCTGGCTCTGGAGAGACGGATGGcggagaggatggaggaggacgAGAGCGGAGGCGCCCAGCACACCCTGGCCCACAAGGACAGggtgATCGAGGAGTTGACACAGCAGAACCATTCGCTTGCTCTCCGGGTCGAAGAGCTCGAAGTTCaccttctttcctctcctctgaagAGTAAAGAACGAGAAGCTGAGAGTCATGGTGAGAGGCGAGTCCACGCACACATGCAGAGGCTGATTGCCGAGCAGCAGGGTCAGCTCAGCCAGTACGAGAGCGCTGCGGGTCAGTGTGTCGGCGAGCTGCAGAAGGCCCAGGACCAGGTCTGCTCGCTCCAGGCCAAGATCAGAGAGAGCGAGACCAGGAACCAGaagctGCAGGAGCGTCTGGGTGCGATGGAGTTGGAGCTGCGTTCGGCCCGAGAGGAAGCCCAGCGACAGGAGAGAAGCATCCAGAACATAACGGACACCGCTAACTCCAAGGAGGCCGAGgctGCGGAGCTGTATCGGGCGATTGAGGAACAGAATAAGATGCTGTGTTCTCTCAAAGAGCTCGCCCAGCGCGGCCAGCTGCAGGTGTCCGGTGCAGACAGTGCTCGGGGTCAGGGTGAGGTGCTGGCTCTGCAGGCCTCTCTCTTCCAGGCTCAGCTCGAGCTGCAGGCGGGTCAGCGGGCGCAGCGGCAGGCCGCCAGGATGCAGGAGGACCTGAGCCGAGCCCTGCAGCGGCTGGAGCAAGACCTGCATGGGGCGCTGCAGCACCGGAGGGACACGGAGAGACACAACCAGGATCTGCAGCtggctctggagaaggctcgaTCGGCTCTGCAGGAGAGGGAGGAGCAGCTGAGAGAGGGCGACGGCGAGCGCCAGAGGCAGGACGCGGCGAGAGAGAAGACGGTCCGAGAGCTGAGGGCGGCGCTGCAGACCAAAGAGCAGCTGATGGAGGACTACTGTCAGCTGCTGGAGGATccaaaggaggagagagactcTCTGCTTCAGAAACTCCACCAGAGAATCAAGGAGAGAGACCGAGCTCTGGAgCGAGCGCTGGACGACAAGTACCGCAGCgtggaggagaaagaggaggcgACTCGtcggctgcagctgctgctcagAGAGCGGGAGAGAGACCTGGAGAGGCAGCGCTGCGTCCTCGCCAACAACGAGGAGACCATCACTagcCTGGAGGTGCTGCTGCGCGGGAAGGCTCTGGAGCTGGAGCAGGTGTGCGACGCCTGGAGGAGCGTCCAGCGTCAGCATCACGAGAGCGAACGGAGACAGAGCGGcgtcctgagagagagagacgccaTCATCAGCCAGCTGCAGGCGGCGCTGCACGCTCGCACGCAGGAGGCCCAGGAGCTGCGCTGCTCCCTGCTGGCTCCGATCCAATCAGTTCCCAACGACGTTCTGGAGGAGCTGAAGGCCCGCCTCCAGCTCAAGGACCGCCTCTTCCAGGAAGTACTGGCCGACCGCACCCAGCAAGCCCAGCAGCACCACGAGCAGGTCCAGGATCTGCTCAGAACCATCAGCTCCAGGGACCAGTACATCCAGGAGTCTGCGGGCCGGCTCAGTGAGGTGATGGGCGAGCAGACGGGGAGGCTCCAGGAGCTGCGCAGACAGCTGAGCTCGGGCGTCGGGTCAGGGTCAGGGTCAGGGTCTGGGTCAGGGTCTGGGTCAGGGTCTGGGGCAGACGCGGCTCTGGAGCTACAGGCCATGCAGGAGGAGCTGCGTCTGGCTCTCAGGAGGGAGGCGGAGAGCCAGGAGCTGAGCAGGAGCCAGGCCGCCAGGGTGGACGCCCTCACCGCCACGCTGCACGTGAAGGACGAGATCATCCGGGACTTCCAGAGGCAGATGGTGGAGCCCTCCGCTCTCCCGCTGGTTGAGCAGTTGACCCAGCAGGTTCAGGAGCTGAGGGAGAGCCTGTTCCAGCAGGACGGTCCCCCGGCCAGAGGCCCCGTCCTGGTCCGGGACTGGCCTAACGGCAGGCAGCCTGAGTTTGGAGAGCTGAGCTCTGAGGATGAAGACGAGGCCGATGATGATTTAAACAGCGAGTACACCGAGAGCGTTGATGAAGACGAGTCCAAACTGAGGGTCCAGTCTCTGGCCAACACCAAGGGTTGTGGAGGCCCAGAAAAGGCTTCATCCCAGGATCAGCTGTTTGACAGGCAGGGACTGATGGAGGTCAAACAGCTGGTGGAGCAGAAGAGGGCGGTGGAGAGAGAGCTGGGAGAGCTGAAGGCTCAGCTGGAGAAGGCCGGCTTCTCCTCACTCTCACAGATGAGGAAAGCTCTGTTCAGCCTGCAAGCAGAGAACGGAGATTTGAAGCATCGGCTGGCTCAAGGGCTGCAGCCCGACGGTAAACACAGCGAAGGACAGATGGGGTTGGACGAGGAAGACGAGGAGGAAGAGTTGGATGTGACCATAGAAGGggtggaggaggatgaagaggaaatcTCTGAGATGTGGGACCCCTGGGATGGCGAGCAGACAAACATCCAGCCCGCCGATGAGCAGAGAGCCGACAGACCGGAGTCACTGCACCCACTCTCCGAATCCTCTCAGGATGTCGTGGACAGCGAGCGTTCAGCCAGTCCGCAGCAGGGCGCCGTGTCCTCGCCGAAAAGTGGGAAGACAGTCCGTCTGCAGCAGAAGAGCAAAGAGCTGCAGGAGAGGCTGATGGTGTCTGAGGCCACGGTGCAGGCTCAGGCCGAGCAGCTCAAAGACTACAGGGAGCTGCTCACGGAGACAGCCGTGCAGCAGGACAGTAAGCAGATCCAGGTGGACCTGCAGGACCTGGGCTACGAGACCTGCGGCCGCAGTGAGAACGAGGCCGAGAGGGAAGACACCAGCAGCCCAGAGTTTGACGACCTGGAGATGTGCACCTCTCTGGACTGTGGTTCCCAGTGGTGGCCTGCCAACACCAGCAGCAGCGCCACCTTAACCAAAGGAACGCCCCAGGGCTCCGGCGACGGAGACGAGATGTCCTCTCTCCAGCGCCTGGTGGAGGACCTCCGCTCGCAGCTGTCCCGCTCCCAGGCGGTGATCCGCGGCCTCCAGAGCCGCCTGCGCTCCCTCTCCACCTCCAGCGACTACGCCCCCTCCACCCCTCGCAAAGTCAACTGGTCCTTCCAGGCGTCGGAGGACGACGAGGGCTGGCAGTCGTCCGACGGGGGTCCACTGGCGTCGCCCCGTCACCCCCGCCCGGACAGGGGCCTGCAGGAGCTGGCGTCCCGCGTGGACGCACTGGAGGACCAGCTGAGGAAAGGAGGCAGCAAGTCCGTCGGCGAGGACGTAAAGTCTGCCACCTGGCCGGGTAAATTCGATACTCTAATCCAGGCTCAGGCCCGAGAGCTGTCCCACCTGCGCCAGCGGCTGAGGGAGGGTCGGGGCGTGTGCAACATCCTCACGCAGCACCTGGGCGACACCACCAAGGCCTTCGAGGAGCTGCTGAGGGCCAACGACATCGACTACTACATGGGCCAGAGCttcagggagcagctggctcAGAGCGGCGCCCTGGCGCAGCGAGTCGCCGCAAAGATAAGCGGACGAGATCATCCCGAAGATCCAGATGAGAAAACAGAGCTGCTCGCCATCCGgcTCAGTAAGGAGCTGCAGCAGAAGGACAAGATCATCGAATCTCTCCGCTCCAAACTAAACCAGCagcaccaccaccatcatccTAATCACCACCGCTCTGACACGCCCTGCAGCAGCCACGCCCTCTCCGACACCACCGACCAATCGGATCGCATCTCCTATGTGTCTGACGAGCACGGATCCACCAACGGGGAGCTAGACCTATGCTCCGACGTGGACGCTGCCAGCGAGCTCGGCCAGAAGGACGCGCGCTCTTCTACCAGAGTCAGCACAGGCAGCCACTCTCACAGTGTGAACACCATGTCACGTCATCCGTCTGTCCCTCCATCCATCTCCTCGTCCATCCACACAGCCCAGTCCTGTCTCAGctgtcccagcatgcattgccCCAGCTCGCAACACAAGCCCGCAGCAGAGATGCCGAGTCAGACAGCCTCAGTCTTCCCCTCTACTCTCTTCcaccctcccctctcctccccctcctccgccTCCCCCCGCCAGAGGGCACCTCTGCCCTTCCATCCTCACCCCCCAACCCTGCAAACCCGTTACCCAGGCAGCGGGGGAGTGGGGTTCTCCCTGGCCGAGGTGCATCAGGAGCTGCAGATGTTACAAAGGCAGCTGGGAGACAACGAGAGGTTTTCCACTCCCCAGTCCAAACCTCCCCAGGGTTTCCCGTTCTCCCAGCAGCAGCCCGACTCCTCTGCCTTCCCGCCTCTCTCCTACCACGGATACCGGCCGTCACCTTTCAGCAGCGGCCTGGACGCCGGCTCCACGTTGAAGGCCGGGGCCAGTCTGCTGGagagcagtgcattgtgggatatgaGCTACGGTAACCGGGCAGTGAGACTCGGAGCTGACCTGTCTTCGGGATCCTCGGGGTACCAATCAGGCACCAGCAACACAGGTTCAGACCTGATGAAGGAGCATCTGAGAGAGATCAGGAGTCTGAGACAGAGACTGGAGGACTCCATCCAGACCAACGAGCGCCTCCGACAGCAGCTGGAGGAGAGACTGGCCCGCACCGCCACTGAGAAAgGTGCTCCTACTAACATCTACATCCAGGGTCTGGACTCGGCCGGCCAGCTCTCCAGTGAGATCAGACTCCTGAAGGAGGAGAACGTCAGCCTGCAGAGCCAGCTGAAGCAGGCGGCCAGAGAGAGCACCAAGGAGACGGAGCATCTGAAGAAGGCGGAGCTAGAGGCAGAGAGGTGGgcggagcaaagcaggaagctGCAAACGGAGACTGAAGCTCGCAGGCTCGAGATTACACAACTGAAACAGGACCGGCAGAAGAACCAGGAAGCCgtcaacagaCTGCAGCACGAGGTGAGCGTGGtccagcagcagctctgtgagagCCGCAGTCTGGTCCTCTCTCTTCAGTGCGAGCTGCAGGTGCAGCGCCGAGCGTGTGTAGTCGCCACAAACACGCGCGCAGCAGGTCAGGCCAGTAAAGAAGCCAAACTTGGACCCAGCGCTGCGACCTTTGACCCCAGAGAGCTGCACGTTCAGCTGGAGCAGCAGCTGAGCGGACAGGCCGACACACAGCCTCCATCCAGGAGACAGCTCTTCAACGAAAGCGTCCCGTCCCCGCCTGTGAGAGACACTGGACTCGTCagtccttcctctcctcttcatcctgcGCAGAAACATGCAGCAGAAACCGGAGCAGCCTCCACCCTGCAGGGTCAAGCCCCAGACGGCTCATTCGCCAACCGTCATGGCGCCCATGCAGTGGGCCACATTGATGACTTCAAGGCTCTGCAGCAGCAGATCCTGCAGGGCGGCGCTCTCCTCCGCAAGATGGAGACCGCCCTGTATTCCCTGAGTGGCCCGCAGGAGTTCAGCCTTCATCAGCCTTCAGACTCAGGATCCGTCAGGAAGCTGCTGTCTGACACTAAAAGCCTGCGACAGATACTGGAGGAGGCCGACTCGCTGCTCCGGATGTTCTGGAGAGCAGCTCTGCCAAACTCCGAGGAAACCAAACAGGATGCGTCTCTGAGGGAGGAGGTCGTCTCTCTCCGGCTGAGGCTCTCAGAGCAAGAGCAGGCTCTCAAGGACGCCATGGAGAGAGTCAAGAGCTCCAACCGCACCAAAGATAGCATGGAGCACTTTATAGTCAACCAACtgtCGAGAACACGGGACGTGTTGAGTAAAGCAAAGACAAACTTACAGGAGAACCAGCTCAGGATTTCCTCCCTCCGCCGTGCCTCTTCCTCCCCCTCGTCCTCCTCTTTTCCCTCCCCCTTCTCTTCCTCAcccttctcttcttcctcacACCCCTGGCCTGGTAAAGGTGAAAACACAGGAGGTTTCTGTGAGCTCGCCTTCTCTCCTGGTTGGGGTGTCATGAAGCCTCggatttcctcctcctcctcttcctcctcctcctcttcctctgctgtGCCGGGACGGGCTCAGCTCCAGCGCCCCCTGCAGTCAGCCTTCCTGTAGTGCACCATCTCATTGTTCAAACTGATGGAAAATGATGGAGATTCTGTCTCTCTTATTGTCTGGAGAAGCCTTTCAGttgtgtgctgtctgtctgtcaagagTTTGTTGTTAGAGTCCTGCAGGTTCATGATACTTTATGAATGTGAATGGTTGTTTTATGATTGGCTGAGGCCATCAACTGAAGCGTTTCCTCTCATTTATATGAGACCAGACTGAGTTTGGCTGGAGTTGGTTTATGATTCACAACTTTGGATTAagccttttttttcattttcacagataaaatctaaactttacaaatatgaaaacaGATTTGAAACAGTTTTGGGGCTCTTAGCAACTGTTGAGTCCAGGTCTGATGATTCTACATGTACTGTTTTTAATGTGGAGCTGCTCTTATGTGGTCTTCTTGGCACATGAAAACAGTGACACTGGGGGTGGCTTCTAGGTCTCCAGCCCCGAATCTTTTGGGGTTTTAAAGTAACTTCAACTTTATGTCATTTTACCTCAGTCTCTCTGACAGGACTGGACCGCAAAGTCAATGGAGCAAAAGTTCTGTTACTGGGGAAATATCATCTTTTGATTCTGTGAACTCTACTAAAAAATATGATTCAAGATTAGTAATGCCAAATATCATAGCctcctcctacgtacttccgctcagttttcattttccttcagtactccgtctgggtttgcggtatattctgtGGTTTTTTCTCCGGtaaaatctttaccggtccaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125933 lncRNA upstream 30919 4934071 ~ 4993591 (+) True G93348
TU125935 lncRNA upstream 80563 4943645 ~ 4943947 (+) True G93350
TU125937 lncRNA upstream 80563 4943645 ~ 4943947 (+) False G93350
TU125934 lncRNA upstream 85100 4939148 ~ 4939410 (+) True G93349
TU125930 lncRNA upstream 130804 4893318 ~ 4893706 (+) True G93345
TU126108 lncRNA downstream 126112 5327985 ~ 5328233 (+) True G93448
TU126099 lncRNA downstream 151471 5353344 ~ 5407242 (+) True G93439
TU126101 lncRNA downstream 198258 5400131 ~ 5411358 (+) True G93441
TU126122 lncRNA downstream 198944 5400817 ~ 5406747 (+) True G93462
TU126089 lncRNA downstream 286421 5488294 ~ 5492457 (+) True G93437
XM_039812509.1 mRNA upstream 24070 4966559 ~ 5000440 (+) True prrx1b
XM_039812511.1 mRNA upstream 24070 4966559 ~ 5000440 (+) False prrx1b
XM_039812510.1 mRNA upstream 24070 4966559 ~ 5000440 (+) False prrx1b
XM_039812512.1 mRNA upstream 24070 4966560 ~ 5000440 (+) False prrx1b
XM_039812514.1 mRNA upstream 24070 4966560 ~ 5000440 (+) False prrx1b
XM_039812498.1 mRNA downstream 9297 5211170 ~ 5486885 (+) True mast2
XM_039812499.1 mRNA downstream 9297 5211170 ~ 5486885 (+) False mast2
XM_039812500.1 mRNA downstream 9297 5211170 ~ 5486885 (+) False mast2
XM_039812501.1 mRNA downstream 9297 5211170 ~ 5486885 (+) False mast2
XM_039812505.1 mRNA downstream 127967 5329840 ~ 5486885 (+) False mast2
TU125908 other upstream 311325 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 727100 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 730620 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 806684 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1417685 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 833496 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1000212 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1153024 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2147937 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 2696799 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile