RNA id: XM_039814013.1


Basic Information

Item Value
RNA id XM_039814013.1
length 1597
RNA type mRNA
GC content 0.47
exon number 13
gene id zgc:195212
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22762485 ~ 22770301 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATGAAtagatacaaataaaataaattgttatCTACTCAGATTGACCTGTATTTGTGGGGATCATTTCCGAGAGCTGTATATCCAGAGATCCAAAAGTTGCAGCTGCTGGTCCTTGGAGCACAGGGATTAAAATGGAAGCACTCCAACCTgTCCTCACAGATTTGAAGGAGAGCATGTTTCCCTGTATGTGGCCGTCTCCTCAGCCGGACCCTGAGGAGCTGTGTGCCTTCACCGACCTGTATGGTTCCCTCAGATTACTCCTGTCTTTTCAGATGAAAGATGAAAGATTTAACAGTACAGAGCTGTGTGCTCGAATTGAAGCGTTCCTAGACACATTCAGTTTGGCTAACGCAAAGATCAACATCCACCTCAAGTTCAAACTGAATCAGCAGACCTTCCAGCGAGACTTAAGAGTGAAGATCAAGAGTACAGTTGTATTAGCAAACCAACCGTCACGGATCTTGGACGTCACTTGTAGTACACAGCCTCCAGAGTGTGTGAAGAAAGGCTGCTGGTGTCAGGGAGGACACCCTGTCATTGGAGGCATGGTGCCTCTCAGTATCCCACCTAAAGCCATGGACCAAGGCCTGTTTGGGGAGCTCAGCATCCAACCAGTCACACTACTAAGCCCCTGTGTGCTGCAGTaccccaatctggcaacacaaCTCACTCACATAAAAGTATTGGTATTTGGCCCCAGTAATGTTCCTGTGGCAGGCCCCTCCACCTTCTTCCAGAACCTCCCTGCTCATCTGGACTGTCAGGAACTGGGCCTGCACGGTCTTCACTGCTCCTCCTTCAAAGATCATGTGCACAGCAGTGGCATGGTGTACACAGTAGAGCAAGAACCCTGTAAGGATCCAGAGCAAGAATCAAGTCTTCTGCCAATGCAGCAGAGTCTCCGGCTTTACCTCTTTCTGCAGCACAGTGACCCTTTCAACTGCCACCTCTCTGATCTGATGGCCACAGAGGTGCTGATAGAGCACTACCTGGAGGATATTCTGAACAACAACAGGCAATCAGTCACAAAAGCCCTGCAAACTGAGCTGCAGAACACACTGAAAGCCCAAAATCGCAGAAAAAAGGACCAAGAGAAGCTGCGATCAGCTGCTGAGGTGATTCTCAGTTCGTCCATCAGTGTTGTGAGCTGCAGCAGTAACGTGGACTTCAGAACTGCCTGTCTGAACAGCATGAAGGTGCGTGACACTCATGACCTTTCAGCCTCCCTCCGTGAATCACTGAGGAGGGTGACATCATGGAAATTCACTCCCAGGGACAGGTGCCACTCAGCTCAGATGGAAGAACATCCTGAGAGTGATGACGCCACCAGAAGAGAAATCTGAGCACGTCTGTGTTTGTCTTGAAAGAGTTTTGTTCTGGTTCAAGGCTGTGGGAGCATTTTGTTTTGCAATATAAAGTGGGGTAGTAGTGCATGTTGTACTGTTAATGTGAGGGTGATAGAATCTTATCAGCCTCAAATTTAaataatgcattattattatttttttattgttatgtgtgtgttccaCCAGTTGTTTAACAGTTTTAAAAACGTTCCCAACAGAGATTAACATTAAACTTAATTCTTGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640528.1 lncRNA upstream 36832 22723025 ~ 22725653 (+) True LOC120567160
TU143870 lncRNA upstream 131115 22631079 ~ 22631370 (+) True G107073
TU143843 lncRNA upstream 347150 22415002 ~ 22415335 (+) True G107050
XR_005640407.1 lncRNA upstream 365434 22390353 ~ 22397051 (+) True LOC120566464
TU143816 lncRNA upstream 384145 22331012 ~ 22378340 (+) False G107025
TU143967 lncRNA downstream 53300 22823601 ~ 22823862 (+) True G107149
TU143988 lncRNA downstream 86354 22856655 ~ 22856868 (+) True G107161
TU143991 lncRNA downstream 95667 22865968 ~ 22866201 (+) True G107164
TU143993 lncRNA downstream 96778 22867079 ~ 22874836 (+) False LOC120566955
XR_005640493.1 lncRNA downstream 97171 22867472 ~ 22875098 (+) True LOC120566955
XM_039814015.1 mRNA upstream 8492 22743607 ~ 22753993 (+) False LOC120567158
XM_039814017.1 mRNA upstream 8492 22751696 ~ 22753993 (+) False LOC120567158
XM_039814016.1 mRNA upstream 8492 22751702 ~ 22753993 (+) True LOC120567158
XM_039813163.1 mRNA upstream 57464 22685286 ~ 22705021 (+) True f8
XM_039813063.1 mRNA upstream 78313 22664890 ~ 22684172 (+) True zgc:152774
XM_039814023.1 mRNA downstream 269 22770570 ~ 22778164 (+) True pola2
XM_039814024.1 mRNA downstream 14309 22784610 ~ 22788719 (+) True zdhhc24
XM_039814029.1 mRNA downstream 19313 22789614 ~ 22794208 (+) False LOC120567166
XM_039814028.1 mRNA downstream 19315 22789616 ~ 22794208 (+) True LOC120567166
XM_039814025.1 mRNA downstream 24384 22794685 ~ 22805823 (+) True LOC120567165
XR_005640584.1 other upstream 1301035 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2410318 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2701147 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3156712 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 4868955 17890967 ~ 17893530 (+) False gabra6a
TU143990 other downstream 91889 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 184671 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 487970 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 498490 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 684266 23454567 ~ 23466184 (+) False ubl3b

Expression Profile