G106237 (spock1)


Basic Information

Item Value
gene id G106237
gene name spock1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19604840 ~ 19652474 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU142686
cCTCAGGTTTCTGAAAGCAGTAGCACCACTCGTTGTTAGACAGCTTTCCGTCCTTGAAGGAGTCACAGGAGTTGAAGAGGGGCTTCATGCACAGCTCATACTTGTCCAGGTAGATGGCACtcagctctgattggtccagCAGGAGGTCAAAGTTCATGTCAAGCTTGTTGAACATCCAGCCCAGTGAGTCCTTACAGATGGGCAAGATGCTGGTGTCAAAGTGTCCAGTGGTGGAGTCTAAGCTGTCAGAGGATTTGAGGTCTCTGTTGGCGTCGAGGTGGAGAACTCCGAACCATTCCTTTAGTCTTGCAGCCAGACTGTGGAGCTCTGTGTCGGTgcaggctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaataatgagGAGAGGGGAAGCTGTCAATCTAATGCTGTCA
>TU142687
cCTCAGGTTTCTGAAAGCAGTAGCACCACTCGTTGTTAGACAGCTTTCCGTCCTTGAAGGAGTCACAGGAGTTGAAGAGGGGCTTCATGCACAGCTCATACTTGTCCAGGTAGATGGCACtcagctctgattggtccagCAGGAGGTCAAAGTTCATGTCAAGCTTGTTGAACATCCAGCCCAGTGAGTCCTTACAGATGGGCAAGATGCTGGTGTCAAAGTGTCCAGTGGTGGAGTCTAAGCTGTCAGAGGATTTGAGGTCTCTGTTGGCGTCGAGGTGGAGAACTCCGAACCATTCCTTTAGTCTTGCAGCCAGACTGTGGAGCTCTGTGTCGGTgcaggCAGCCTTTTCAGTCTTATGTGGTGGTTTGCTGAGCTCATGACCAGGCAAACAGGGACACAGCCCGTCACATTTTACTGAGATCGTCTTTCCAGACAGGCAGCTCTGGAACTCCAacttacaCCTGGAGGAGTAGGTGTGTCCATCAGATCCACACACAGGACTTGACTGGAGCCCCAAGCAgagcctacatttcccatgagcACCAGTTTCAAGCCTGTGCTTGTGACCTGCGCTGCCTTTCCTGGGTTtcacaCTGTGAGTTGGCGGCTTGTGATTGGTGCAGATGGCTGTTTGGTAGTCATGGCTGATGCACACCTTGTGAGGAGGGCAGCGCACATTCAGACAAGGGTCCTTTGTAGCGTCTGGACCTTGGTCCAGAGACTTGGC

Function

symbol description
spock1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Orthologous to human SPOCK1 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1).

NR:

description
PREDICTED: testican-1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142686 False 520 TUCP 0.51 2 19604840 19605773
TU142687 True 730 lncRNA 0.53 6 19604840 19652474

Neighbor

gene id symbol gene type direction distance location
bicc2 LOC104951703,LOC100700004,LOC102206312,LOC101472209,LOC102314010 coding upstream 9341 19584399 ~ 19595499 (+)
LOC120566456 NA coding upstream 76564 19507295 ~ 19528276 (+)
LOC120566454 chrna9,LOC103365636,LOC102230700 coding upstream 100499 19498950 ~ 19504341 (+)
ube2ka ube2kb,ube2k,LOC100708886,LOC107088242,LOC102229303,LOC103135484,LOC108261162,LOC101072344 coding upstream 107878 19490751 ~ 19496962 (+)
klb klb coding upstream 115048 19483540 ~ 19489792 (+)
etf1a etf1,LOC108430956 coding downstream 280373 19932847 ~ 19940845 (+)
fbxw11a fbxw11 coding downstream 289935 19942409 ~ 19963248 (+)
si:ch73-233f7.1 LOC103359310,LOC104951883,LOC102312450 coding downstream 362734 20015208 ~ 20022263 (+)
LOC120566322 NA coding downstream 381919 20034393 ~ 20040380 (+)
LOC120566529 LOC103375284,LOC102199591,LOC108242356,LOC106933149,LOC106516975 coding downstream 412512 20064986 ~ 20067565 (+)
G106218 NA non-coding upstream 2747 19515958 ~ 19602093 (+)
G106199 NA non-coding upstream 188065 19416347 ~ 19416775 (+)
G106183 aldob,LOC104946054 non-coding upstream 267269 19331708 ~ 19337571 (+)
LOC120566719 NA non-coding upstream 309760 19294298 ~ 19295080 (+)
G106149 NA non-coding upstream 323590 19220073 ~ 19281250 (+)
LOC120566488 NA non-coding downstream 192365 19844839 ~ 19848278 (+)
G106351 NA non-coding downstream 288464 19940938 ~ 19941715 (+)
LOC120566743 NA non-coding downstream 298283 19950757 ~ 19954963 (+)
LOC120567444 NA non-coding downstream 321311 19973785 ~ 19998801 (+)
LOC120567249 NA non-coding downstream 621359 20273833 ~ 20275911 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 634894 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 1705109 17890170 ~ 17899731 (+)
G105677 NA other upstream 1919141 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 2140618 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 2244578 17357508 ~ 17360262 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 376389 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 699247 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 1282255 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1627213 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 1637057 21289531 ~ 21350978 (+)

Expression


Co-expression Network