LOC120566454 (chrna9,LOC103365636,LOC102230700)


Basic Information

Item Value
gene id LOC120566454
gene name chrna9,LOC103365636,LOC102230700
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19498950 ~ 19504341 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812925.1
GTATGAGCAGGCCAGCAGCTCACCTGGCTGCAggcgtttgattgacagctgaatAGCCCAGTGTGTGGTGAGGCGATGATTCGTGGGCATCCTGTTTCTGCTGCTATGTGATAGCCGGAGTTGTATTCCGTGTCTCAGTCAGCAGACATGCTGCCTCCCCTGCCAAGCACTGAGAACCTGCCTGACCGCGAGGACGACCAGATGAAACGGTGCCCTGCTATCTGCAACTGAGTTCAACTGGGGTTGAACGGGCGCCATGTAGGCCTGTTAGGGGATCACACCAAAGGGCCCTTAGATTGCTGGTCGCAGTTACCTTTTATTTCTTCTTGGAGGTGTTAATAAATGCCCACGATGATTCCAATAATCTGTCTGGCGATTCTGCTTCCTGAAGTGGCTCACTCGGCTCAGGGTCACTATGCCCACAAGCTTCTGAATGATTTGATGGAGAATTATTCCAGCGCTCTGCGGCCTGTCGAGGACACAGACAGAGCCCTCAATGTCACCTTACAGATCACCCTCTCTCAGATCAAAGACATGgatGAGAGGAACCAGGTGCTGATTGCTTACCTGTGGATCAGGCAGACGTGGCATGATGCCTACCTGAAGTGGGATAAAGAGGACTATGACGGGCTGGAGGTGATCCACATCCCCAGCAGCCTTGTGTGGAGGCCCGACCTCGTTCTCTATAACAAAGCTGATGATGACTTCTCAGGGCCAATGGACACCAACGTGAGACTGCGCTACAATGGAGAGCTAACCTGGGATGCTCCTGCCATCACTAAGAGCTCCTGTGTGGTGGACGTCTCCTACTTCCCCTTTGACAGCCAGGAATGTAACCTGACTTTTGGTTCCTGGACCTACAATGGCAACCAGGTAGACATCATTATGGGCATGGACAGTGGTGACCTGTCAGACTTTGTGGAAAATGTGGAGTGGGAGTGTCACGGGATGCCGGCCACCAAAAACGTCATCATGTACGGCTGTTGCTCTGACCCGTATCCAGACATCACCTATACAGTGCTCCTGCAGCGCCGCTCCTCCTTTTACATCTTcaacctcctcctcccctgcttcCTCATCTCCTTCTTGGCTCCTCTGGGTTTCTACCTGCCTGCAGACTCTGGGGAGAAGGTTTCCCTCGGAGTGACCGTTCTTCTGGCTCTCACTGTGTTCCAGCTGATGGTGGCTGAGAGCATGCCTCCATCCGAGAGTGTGCCCCTTATAGGGAAGTACTATATTGCCACTATGACCATGGTCACGGCCTCCACATCTCTTACCATCTTCATCATGAACATCCACTTCTGTGGTCCAGAGGCCAAACCAGTCCCCCACTGGGCAAAAGTCCTCATCATTGACTACATGTCCAAGATTTTCTTTGTTTATGAGGTGGGCGAGAACTGTGccactgcctcctcctcctcttcatcgtCTTCTCACTTCTTCCAGGATGACATCTGTCACCAGCACCTCAACTCCCAGTTTCATGCGAATGGTAAACCAGGGACCCACAGTAGCCGACAGGACTGGCAGGGTCGCAAAAACCCCAGACCTCAGACCCCCAAGCCACAACACCACCCCAGAGTGAAAGCCCAGCACCACATCACCAGAGAAGAGAGGAGCCACTTCTCCAGCTTTGCACCTGGGAAATATGAAGGCTCTAATGGGAAAATCCCAACAGGTGACTGCTGTAAAGAAGACCAGAAGGTCCCCTGCTGCCCTGAAGACAAAAAGCCTCCACCTCAAGGCCCCTCTGTTACCTTCGGCCCCTGTGTGTTCTGCAGCCACGGCAGTGGCTTCCCTGGTGTGGACACCAAGCTGGTGCGCAATGTTGAATATATTGCCAACTGTTTCCGAGAGCAGAGGGCCACATGCGCCAAAGGGGCAGAATGGAAGAAGATCGCTAAGGTGATGGACAGATTCTTCATGTGGATCTTCTTCATCATGGTCTTCCTCATGAGCATCCTCATCATTGGCAATGCACCATGATGCTACAGATTTCTTTATATTTAACTCAATTAACTCTTTTTGCTTAAATAaaactatttagtt

Function

symbol description
chrna9 Enables acetylcholine-gated cation-selective channel activity. Acts upstream of or within positive regulation of cytosolic calcium ion concentration. Is integral component of plasma membrane. Part of acetylcholine-gated channel complex.

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-9

GO: NA

KEGG:

id description
K04810 CHRNA9; nicotinic acetylcholine receptor alpha-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812925.1 True 2049 mRNA 0.52 6 19498950 19504341

Neighbor

gene id symbol gene type direction distance location
ube2ka ube2kb,ube2k,LOC100708886,LOC107088242,LOC102229303,LOC103135484,LOC108261162,LOC101072344 coding upstream 1988 19490751 ~ 19496962 (+)
klb klb coding upstream 9158 19483540 ~ 19489792 (+)
ints10 ints10 coding upstream 21183 19469593 ~ 19477767 (+)
frmpd1b LOC104951712,LOC103365642 coding upstream 35454 19438819 ~ 19463496 (+)
grhpra LOC104933258,LOC103365644,LOC102201851,LOC101467057,LOC100707614 coding upstream 66611 19427666 ~ 19432339 (+)
LOC120566456 NA coding downstream 2954 19507295 ~ 19528276 (+)
bicc2 LOC104951703,LOC100700004,LOC102206312,LOC101472209,LOC102314010 coding downstream 80058 19584399 ~ 19595499 (+)
etf1a etf1,LOC108430956 coding downstream 428506 19932847 ~ 19940845 (+)
fbxw11a fbxw11 coding downstream 438068 19942409 ~ 19963248 (+)
si:ch73-233f7.1 LOC103359310,LOC104951883,LOC102312450 coding downstream 510867 20015208 ~ 20022263 (+)
G106199 NA non-coding upstream 82175 19416347 ~ 19416775 (+)
G106183 aldob,LOC104946054 non-coding upstream 161379 19331708 ~ 19337571 (+)
LOC120566719 NA non-coding upstream 203870 19294298 ~ 19295080 (+)
G106148 LOC102076833,LOC106676291 non-coding upstream 218468 19274688 ~ 19280482 (+)
G106153 NA non-coding upstream 241211 19253554 ~ 19257739 (+)
G106218 NA non-coding downstream 11617 19515958 ~ 19602093 (+)
LOC120566488 NA non-coding downstream 340498 19844839 ~ 19848278 (+)
G106351 NA non-coding downstream 436597 19940938 ~ 19941715 (+)
LOC120566743 NA non-coding downstream 446416 19950757 ~ 19954963 (+)
LOC120567444 NA non-coding downstream 469444 19973785 ~ 19998801 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 529004 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 1599219 17890170 ~ 17899731 (+)
G105677 NA other upstream 1813251 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 2034728 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 2138688 17357508 ~ 17360262 (+)
G106237 spock1 other downstream 100499 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 524522 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 847380 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 1430388 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1775346 21279687 ~ 21283229 (+)

Expression


Co-expression Network