LOC120567259 (LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062)


Basic Information

Item Value
gene id LOC120567259
gene name LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17458247 ~ 17464222 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU141820
TCAGTATTCACCTCAGTTTTAATTTATCCTGTGTAGGAGTGGGGCCAGCTTATGACCGTGTTGGCACCAAGGATAGCATCATGATCCGCGTCCCTAACCACACGGTGACAGGCCACCTATGTGACATCACCGGACCCCTTGCTATCACGTCAGCCAATCCCAGCGGAGAGCCAGACAGCACCCACCACACCATGGTCATCAATCGACTGGGACACAAGATCCAAGGGGTTCTGTGTGACGGAGACTCAAATGAAGTTGTTGCTTCCACCGTGGTTAACTGCCTGAAGATTGATGAAGG
>XM_039814160.1
ACAGGTTGTTGAAAGGATGGTGGTGCTTTTTGGATTGTGACCTGCTTTATATAACCCAGGGCTATGACACTGGCCTGGGAGGAACAGGGAAGTGCCAGCAACAGAGGTGTATCACCTTATCAAATTAAATTTTAATTTCCACGTTGACCACCATCATCATCGTCATGACCAGCATCACCATActcagaagaggaggaggaaggagtggAACTGTATTGTCCAATGGTTGCAGACTGTGGGGGATTTTCATGAACTCCTCCTACACACGGGGAGGCCTTATTTATGACAAACTTTCATCCCTGCTTCAGAACAACTCAACAGTTCATCTGTCTGAGCGTCTTCACCAGCTTGACAAGAAAGACAGGATGGCAACATCAGATGGGTTTCCAGCCAGTTTCTATGGTGAACCAGGAGTGTTAGGCATGTTATCCAATGGGATAAGTGCATTCCTCGTACTGCTACAGAACTTCAATACAGCACACACTGGCAATGCACCAGTTGGAGTGGAAAACATACTTGCAGGTGTTCATCTCATTTTGATTGGTGGTATATGCCAACTGGTGGCTGGACTGATTTCCTTTAGAAGATACGATCATCTGAGTGGCACTGCGTTCATTGGCTATGCTGCTCTTTGGGGCAGTTATGGTGCCACCCGAATCTACTTCGGTGCCTTAGCTGAAACTCCTGCAACAGCATCTATGCCACATCAGATGATGAACAATTTGTCCCTGTCCACTAACATGATGAGCAACATGTCTCTGAATGCCACCACAGAGATTCCAGTTAGCCATCTTTTGCTGTCCATAAAAGAGTCAGCAATCGCTGGTCTGGTCCCTTATATCCTTCTGTCCTTTCTCCTAGCCTTCTGCTCTGCCACAGTCAATTACATCATGCCTTTTGTTTTTGGGGCCATCACAGCCACCTTAGTTTTTGAAGCAGTGGGTCTGGTAGCGAGCTCCTGGGCTCTCGTGGTCTCTGGGGTTCTGGAGTTGCTCATTCTGATTTTTGCCATCTATGGTTCAGCTGCACTGCTCGTAAAAGGTCTGACTCAACGTCTAGTCCTCAAAGGCTTCGGTACCCCCCTTTTTAATGTTCTTCTGCTAGGGACCCCCAACTCAGCAAGCGCCCAGAGCATTGgccaggagaagaagaaaaacacaaaatatgcaGAGCCCATGGCCTTGGGTTTCTTCTGTGACACTGTTGCCTCTTTCATCTTTGCTTTCTACAGCTTTGGGTACATGAAGTCCTTTGGCTTAGGAGTAGCATGGGTCTCAATCATCACAGTTGCCCAGCTGTTCTCCAGCTACTACGCCCATCTGCGCCAAGACTGCTACCACACCACTAAGTTTGGTCTCCATGCCACATATTGGCTGATCAAAGCTTGGGATGAATTTGTGGTATCTGCTCTGGTTGCGGAGGACATTAATGTGGCCTCAGGTAGGGTAACAATGGTGGGAAATTGGTTCTTTGTGATGGCAGGCGTGGTGCTCTGTGTGGGAAGCCTGAACACAGATGTCCTAGAGCTGATCCACAACATGTTGTTTCTCCTGCTTACGCTCTCAACAATCCCCCAGATTCCTCTCCAGGGATACTACATCTTCTTTGGTGTAGCCTGCTGCCTGTTCACCGCAGCCTCATTGTATGGCACTTTCTCGCGTCTCATCAACACCATAGCAGAGAAGTCTCTAATCCCTGTAGGACCACAGCCCATTTCCTCTGACCAGTTGAAGAAGGCTTTGAAGTGCTGCAGGGCCGAGCAGGGGGACCCAGAGCCCCTACCCCAAACTGACCAGGGTTCAGACACCCTGTTCTACCTTTCAAATGGGATTGCAGCTCTCTCAGCTCTTCATGCAAGTTCATCCAGAACGAATCCTACCTTTCTTCATCTGACTATCCCTTGGGTCCTCATCTCTGGAGCCATCATCCAGGTCTATGTCAGCCGACTGCAAGTAACAGGAGGTGGCCATTTTGGTTCAGTCATCTCATCCATCTATGTAGCAGTATGGGCAACCTGGACCTGGTTTAGGTTTGCAGGTGACATGCTTCAGCTTTCCACAGAGGAAGCTTACGGTTTTACAGCCGGAGCCATTGCTCTCTTGGTCATTAATGCTTTCCTTATGCTGATTGCTGCCAACAGGAACCTGGTTTTGCTGTTTCTAACAGCAGTCATGGAGGTTGTTCTGGTCTGTTTCCTGCTTTCCACTCTGCAGCGACTGCCTTATGAGCTAGAAATTGCCATGCTTTCACTACTTTCAATAATTTGTATATATGGAGCTCTGGCATCACTGGTGAACTGTATCTTCTCACAAAGACTGCTACCTATGGGCCCTCCCTTAAGAAAGGAGAAAGTGAAGCAGGAATCTGCTCCGGAGCTTCCCTGTCCCGTGGCTAATTCCCGACTCACCAGTGGTCTCCTGAAGATCTCTGGCCTCCTGAAAGAAGGAGGAGTGTGTGGTATTCCCACAGACACTGTGTATGCCCTGGCTGCCTCCTGCAAGAATCCTCAAGCTATAGAGAACAtctataatattaaaGACAGACCAGCAGAGAAGCCCATCTGCATTTGCATCTCTAACGTGGAGCAGCTGGTGGCAGCCAAGCCTCCCTTCAGCCCTCTGCTCTGGGAGTTTATGAGGAATGTGTATCCAGGCGGCATCAGCTGCATCGTCAGCAAAGGAGACTGGCTGTTCACACTAGGAGTGGGGCCAGCTTATGACCGTGTTGGCACCAAGGATAGCATCATGATCCGCGTCCCTAACCACACGGTGACAGGCCACCTATGTGACATCACCGGACCCCTTGCTATCACGTCAGCCAATCCCAGCGGAGAGCCAGACAGCACCCACCACACCATGGTCATCAATCGACTGGGACACAAGATCCAAGGGGTTCTGTGTGACGGAGACTCAAATGAAGTTGTTGCTTCCACCGTGGTTAACTGCCTGAAGATTGATGAAGGGACCATCACCATCGTAAGGGAAGGATGTGTCCCTGCAGTAAAAGTCCGACAGATCTTCGACAGAGTGAAAAGCGCTATGGTGTGATTGTCTCGTACCTCATTTCTCTACCTCAGAGAGCCTCATCATGACTTGTTCCCTacaagaaaagaagaaacactAAATGGATGATATGTGAATGACTGAGTGAAAGCATGTGTATTGCtggttgtgtagcctatgtgtgGTTTTCTTGGCAAatgttacaataaaaaaaacatttgtagcTCACAATGTCACGACATGAATTACGCAGTTATGTTTATAATAAGCTGGGTGAAATAGATACATTTTCTGTTGCTGTATGTATTAAGCTCACAGTGCAAACAATGAATTTGACTAATGTTGTGCAATGTTTGtgtccaaaaataaaaataacaatgtcACAGATTA
>XM_039814161.1
GGGATTTTCATGAACTCCTCCTACACACGGGGAGGCCTTATTTATGACAAACTTTCATCCCTGCTTCAGAACAACTCAACAGTTCATCTGTCTGAGCGTCTTCACCAGtGAAACTGCAGCTTGACAAGAAAGACAGGATGGCAACATCAGATGGGTTTCCAGCCAGTTTCTATGGTGAACCAGGAGTGTTAGGCATGTTATCCAATGGGATAAGTGCATTCCTCGTACTGCTACAGAACTTCAATACAGCACACACTGGCAATGCACCAGTTGGAGTGGAAAACATACTTGCAGGTGTTCATCTCATTTTGATTGGTGGTATATGCCAACTGGTGGCTGGACTGATTTCCTTTAGAAGATACGATCATCTGAGTGGCACTGCGTTCATTGGCTATGCTGCTCTTTGGGGCAGTTATGGTGCCACCCGAATCTACTTCGGTGCCTTAGCTGAAACTCCTGCAACAGCATCTATGCCACATCAGATGATGAACAATTTGTCCCTGTCCACTAACATGATGAGCAACATGTCTCTGAATGCCACCACAGAGATTCCAGTTAGCCATCTTTTGCTGTCCATAAAAGAGTCAGCAATCGCTGGTCTGGTCCCTTATATCCTTCTGTCCTTTCTCCTAGCCTTCTGCTCTGCCACAGTCAATTACATCATGCCTTTTGTTTTTGGGGCCATCACAGCCACCTTAGTTTTTGAAGCAGTGGGTCTGGTAGCGAGCTCCTGGGCTCTCGTGGTCTCTGGGGTTCTGGAGTTGCTCATTCTGATTTTTGCCATCTATGGTTCAGCTGCACTGCTCGTAAAAGGTCTGACTCAACGTCTAGTCCTCAAAGGCTTCGGTACCCCCCTTTTTAATGTTCTTCTGCTAGGGACCCCCAACTCAGCAAGCGCCCAGAGCATTGgccaggagaagaagaaaaacacaaaatatgcaGAGCCCATGGCCTTGGGTTTCTTCTGTGACACTGTTGCCTCTTTCATCTTTGCTTTCTACAGCTTTGGGTACATGAAGTCCTTTGGCTTAGGAGTAGCATGGGTCTCAATCATCACAGTTGCCCAGCTGTTCTCCAGCTACTACGCCCATCTGCGCCAAGACTGCTACCACACCACTAAGTTTGGTCTCCATGCCACATATTGGCTGATCAAAGCTTGGGATGAATTTGTGGTATCTGCTCTGGTTGCGGAGGACATTAATGTGGCCTCAGGTAGGGTAACAATGGTGGGAAATTGGTTCTTTGTGATGGCAGGCGTGGTGCTCTGTGTGGGAAGCCTGAACACAGATGTCCTAGAGCTGATCCACAACATGTTGTTTCTCCTGCTTACGCTCTCAACAATCCCCCAGATTCCTCTCCAGGGATACTACATCTTCTTTGGTGTAGCCTGCTGCCTGTTCACCGCAGCCTCATTGTATGGCACTTTCTCGCGTCTCATCAACACCATAGCAGAGAAGTCTCTAATCCCTGTAGGACCACAGCCCATTTCCTCTGACCAGTTGAAGAAGGCTTTGAAGTGCTGCAGGGCCGAGCAGGGGGACCCAGAGCCCCTACCCCAAACTGACCAGGGTTCAGACACCCTGTTCTACCTTTCAAATGGGATTGCAGCTCTCTCAGCTCTTCATGCAAGTTCATCCAGAACGAATCCTACCTTTCTTCATCTGACTATCCCTTGGGTCCTCATCTCTGGAGCCATCATCCAGGTCTATGTCAGCCGACTGCAAGTAACAGGAGGTGGCCATTTTGGTTCAGTCATCTCATCCATCTATGTAGCAGTATGGGCAACCTGGACCTGGTTTAGGTTTGCAGGTGACATGCTTCAGCTTTCCACAGAGGAAGCTTACGGTTTTACAGCCGGAGCCATTGCTCTCTTGGTCATTAATGCTTTCCTTATGCTGATTGCTGCCAACAGGAACCTGGTTTTGCTGTTTCTAACAGCAGTCATGGAGGTTGTTCTGGTCTGTTTCCTGCTTTCCACTCTGCAGCGACTGCCTTATGAGCTAGAAATTGCCATGCTTTCACTACTTTCAATAATTTGTATATATGGAGCTCTGGCATCACTGGTGAACTGTATCTTCTCACAAAGACTGCTACCTATGGGCCCTCCCTTAAGAAAGGAGAAAGTGAAGCAGGAATCTGCTCCGGAGCTTCCCTGTCCCGTGGCTAATTCCCGACTCACCAGTGGTCTCCTGAAGATCTCTGGCCTCCTGAAAGAAGGAGGAGTGTGTGGTATTCCCACAGACACTGTGTATGCCCTGGCTGCCTCCTGCAAGAATCCTCAAGCTATAGAGAACAtctataatattaaaGACAGACCAGCAGAGAAGCCCATCTGCATTTGCATCTCTAACGTGGAGCAGCTGGTGGCAGCCAAGCCTCCCTTCAGCCCTCTGCTCTGGGAGTTTATGAGGAATGTGTATCCAGGCGGCATCAGCTGCATCGTCAGCAAAGGAGACTGGCTGTTCACACTAGGAGTGGGGCCAGCTTATGACCGTGTTGGCACCAAGGATAGCATCATGATCCGCGTCCCTAACCACACGGTGACAGGCCACCTATGTGACATCACCGGACCCCTTGCTATCACGTCAGCCAATCCCAGCGGAGAGCCAGACAGCACCCACCACACCATGGTCATCAATCGACTGGGACACAAGATCCAAGGGGTTCTGTGTGACGGAGACTCAAATGAAGTTGTTGCTTCCACCGTGGTTAACTGCCTGAAGATTGATGAAGGGACCATCACCATCGTAAGGGAAGGATGTGTCCCTGCAGTAAAAGTCCGACAGATCTTCGACAGAGTGAAAAGCGCTATGGTGTGATTGTCTCGTACCTCATTTCTCTACCTCAGAGAGCCTCATCATGACTTGTTCCCTacaagaaaagaagaaacactAAATGGATGATATGTGAATGACTGAGTGAAAGCATGTGTATTGCtggttgtgtagcctatgtgtgGTTTTCTTGGCAAatgttacaataaaaaaaacatttgtagcTCACAATGTCACGACATGAATTACGCAGTTATGTTTATAATAAGCTGGGTGAAATAGATACATTTTCTGTTGCTGTATGTATTAAGCTCACAGTGCAAACAATGAATTTGACTAATGTTGTGCAATGTTTGtgtccaaaaataaaaataacaatgtcACAGATTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106925651

GO: NA

KEGG:

id description
K07566 tsaC, rimN, SUA5; L-threonylcarbamoyladenylate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
TU141820 False 298 lncRNA 0.52 2 17463289 17463700
XM_039814160.1 True 3392 mRNA 0.48 12 17458247 17464222
XM_039814161.1 False 3164 mRNA 0.48 11 17459328 17464222

Neighbor

gene id symbol gene type direction distance location
LOC120567257 LOC104923207,LOC108240567,LOC108240539,LOC107089023 coding upstream 8291 17445592 ~ 17449956 (+)
LOC120566522 LOC107373325,LOC103391192,LOC108240538 coding upstream 94672 17360382 ~ 17363575 (+)
zgc:174917 LOC103359158 coding upstream 118358 17337695 ~ 17339889 (+)
si:ch211-153b23.7 LOC104923197,LOC103359159,LOC104943958 coding upstream 122342 17329835 ~ 17335905 (+)
rhogd rhog,LOC104923191,LOC103370722,LOC101076287 coding upstream 397257 17057280 ~ 17060990 (+)
LOC120566523 LOC108240568,LOC103359160,LOC106514372 coding downstream 36189 17500411 ~ 17504272 (+)
uprt uprt coding downstream 154320 17618542 ~ 17623544 (+)
fgf16 fgf16 coding downstream 205975 17670197 ~ 17676796 (+)
nr3c1 LOC103359143 coding downstream 334434 17798656 ~ 17829511 (+)
fgf1a LOC102791635,LOC100693787,LOC101468745 coding downstream 367671 17831893 ~ 17835163 (+)
G105595 NA non-coding upstream 133550 17324468 ~ 17324697 (+)
G105593 NA non-coding upstream 159259 17298543 ~ 17298988 (+)
G105591 NA non-coding upstream 161076 17296575 ~ 17297171 (+)
LOC120566904 NA non-coding upstream 292353 17164283 ~ 17165894 (+)
G105579 NA non-coding upstream 295649 17159538 ~ 17162598 (+)
G105651 NA non-coding downstream 40895 17505117 ~ 17505345 (+)
G105652 NA non-coding downstream 41601 17505823 ~ 17506029 (+)
G105667 NA non-coding downstream 121795 17586017 ~ 17625788 (+)
G105676 atrx,LOC102794659 non-coding downstream 215477 17679699 ~ 17682631 (+)
G105685 NA non-coding downstream 233541 17697763 ~ 17699727 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 97985 17357508 ~ 17360262 (+)
G105542 NA other upstream 306740 17141983 ~ 17151507 (+)
G105536 NA other upstream 330462 17126355 ~ 17127785 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other upstream 500837 16951012 ~ 16957410 (+)
nlgn3a nlgn3 other upstream 531613 16799783 ~ 16926634 (+)
G105677 NA other downstream 218697 17682919 ~ 17685699 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other downstream 425948 17890170 ~ 17899731 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other downstream 1499712 18963934 ~ 18969946 (+)
G106237 spock1 other downstream 2140618 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 2564641 20028863 ~ 20061338 (+)

Expression


Co-expression Network