fgf1a (LOC102791635,LOC100693787,LOC101468745)


Basic Information

Item Value
gene id fgf1a
gene name LOC102791635,LOC100693787,LOC101468745
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17831893 ~ 17835163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813413.1
GGACGCGCACCCAGCTGCCTCTGTGATCTCTGCGCTCGTTCACGAGCATGTAAACACCTGACCACTGCAGGGGACCGAGCCCGCGGATTGTTCTCATAGAAAACCAAACTCCTCTACAAAGCTCCCTGTTGGTCACACAGCTGGGTTGATTCCGAGCAGGATGGCGGATGAGGAGAAGTTGGGAGCAGAGGGGCAGACGGTGGACAGCGGCCCGCTGCCGGACTCCAGGCGGCGGACCCGGCTGTACTGCATGAATGGCGGACACCACCTCCAGATCCTCCCTGATGGGACGGTTCAGGGCCACAGGGATGACGGGGACGTTCACATTGTTTTAAAGCTCAAAGCTGTGGACAGAGGTGTAGTGGTCATCCAAGGAACAGAAGCCGGGCGATACTTGGCCATGAGCGACGAGGGCCGATTGTACAGTTCACCCACAGTGACTGCTGAATGTTACTTCCTGGAGAAGTTGGAGGAGAACCACTACAACACATATGTACCTCAGAAATATCAGGAGAGGAATTGGTACGTAGCTCTGAAAAAGAACGGAAAACCTAAACTGGGTCCTAGAACTCACATCGGACAGAAGGCCGTCTTCTTTCTGCCCCGACAGCTGAgtgactccggggagtaaagaCGCTCTCAGCACACAGCGATACCTCAGCCTAAATGGAACGAATGTTGTGAAGGGTTGGGCTTGCAAAAATGAATCTGTCAAGAACAAAAGGGGGCGAAGCTGCAATAATTGAACGGATAATTATAAGGGAAAGGACCAGCTTGCATCTGAGCTAAAATACTGTGCATGTCATCATCTTTTTCCCCACTAACGCGTCCCATTTTAGCTGGTGGCAGGTCTTCTTATTGCAAAACATGAAGAGCAAACAAGAAAGCAAGTATTCCATTATATATATtctattataataaaaaagtagTATATGATGTAGCACATTTAGTTACCTGATTATCATATACAATTGTCTCCAGATGTCAATGAAATTTGGTGGAAGGTTAGACCAGAGGCAGGAACAAGTAActgcttaatttaaaaaaaaaagtccaagcTGAAAAACTGCAATGTCTTATTTCCAGCAGTTACACTTTGCTGCCACCAATGTGGAAAATTACGAAATGACCAAGTGCGCCATTGAACAGACCAAAGCTGCCACTCTGAGCCACATGAATAACTTTGCTTCATTATACTAACCTGTAAATAATATAACCAAGACTGTAATACAATCCAGACAAAGAAATGATGCATTAAAAGTGACATTTATTTAACACTAAACATTTTCTGTACAGTTTCATaacaacaaaaccccaaggttgCAGCTTTACATCACATAGAAGTAAGCATAATGAGTCCGTATCAAAGCCATGGCAGAAGTATGAAGTTAACCGATTAAGCTAACAGTTCAGTTTTTTGGACCAGACTAAATCCAGATTAACTCCTCGCATTGAAAACAGCACTTAGATGATGAAAAGCTATTATCCTGACATGTCATTTCCCttagaatataaaaacaaaaaccactGTGTCAGTCATTCCTTGTTTTATATGTCTGGGACTTAAAATAATGATAGGAACATCCTCTGGGTTTTATTGGTTATGTTTCTAAAAGTGCACCTGCATACAACATTCTTTGATATAGTTTTGATAGCCACAAGATAGCTTACACCTTATTAAtcatttacacaca

Function

NR:

description
putative fibroblast growth factor 1 isoform X1

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K18496 FGF1; fibroblast growth factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813413.1 True 1694 mRNA 0.43 3 17831893 17835163

Neighbor

gene id symbol gene type direction distance location
nr3c1 LOC103359143 coding upstream 2382 17798656 ~ 17829511 (+)
fgf16 fgf16 coding upstream 155097 17670197 ~ 17676796 (+)
uprt uprt coding upstream 208349 17618542 ~ 17623544 (+)
LOC120566523 LOC108240568,LOC103359160,LOC106514372 coding upstream 327621 17500411 ~ 17504272 (+)
LOC120567257 LOC104923207,LOC108240567,LOC108240539,LOC107089023 coding upstream 381937 17445592 ~ 17449956 (+)
LOC120567299 sept8 coding downstream 29281 17864444 ~ 17881876 (+)
ccng1 ccng1 coding downstream 47320 17882483 ~ 17887495 (+)
gabrb2a gabrb2,LOC102788768 coding downstream 64808 17899971 ~ 17933474 (+)
atp10b atp10b,LOC104956132 coding downstream 105137 17940300 ~ 17958880 (+)
atp7a atp7a coding downstream 134725 17969888 ~ 17987028 (+)
G105688 NA non-coding upstream 122724 17705876 ~ 17709169 (+)
G105685 NA non-coding upstream 132166 17697763 ~ 17699727 (+)
G105676 atrx,LOC102794659 non-coding upstream 149262 17679699 ~ 17682631 (+)
G105667 NA non-coding upstream 206105 17586017 ~ 17625788 (+)
G105652 NA non-coding upstream 325864 17505823 ~ 17506029 (+)
LOC120566776 NA non-coding downstream 4739 17839902 ~ 17840952 (+)
G105743 LOC102790791,LOC101467139 non-coding downstream 21947 17857110 ~ 17859633 (+)
G105791 NA non-coding downstream 133587 17968750 ~ 17968955 (+)
LOC120567419 NA non-coding downstream 156455 17991618 ~ 17994385 (+)
G105798 NA non-coding downstream 166272 18001435 ~ 18001780 (+)
G105677 NA other upstream 146194 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 367671 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 471631 17357508 ~ 17360262 (+)
G105542 NA other upstream 680386 17141983 ~ 17151507 (+)
G105536 NA other upstream 704108 17126355 ~ 17127785 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other downstream 55007 17890170 ~ 17899731 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other downstream 1128771 18963934 ~ 18969946 (+)
G106237 spock1 other downstream 1769677 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 2193700 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 2516558 20351721 ~ 20352167 (+)

Expression


Co-expression Network