LOC120566776


Basic Information

Item Value
gene id LOC120566776
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17839902 ~ 17840952 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640462.1
GTTGGGAAATCTTCCTCCATCTTCCTTGTATTCAAAGAAAGCTGCAGAGGCAACAAGCAAATGACGACACATCCAGAAATTCTTCCAAACTACTACAGAGCCGATGATGTGATGAATCAAATCTACTTTCTGCAGAACGGAGAGAAAAGCTGGACATGGTGCCTAAAGATATTATCTTTACGCACGCAATGATGACCCAAATGATAAAACATGAGTTGGACTATCATTTGTAATTTTGGGACataaaggcagaaaaaacaTCCATCCCCAGATATATCCActaacagagagacacagataaATAAACAGGCATTGATAATTAAAGGTGGctctctaaaaaaaaattgatattaTTTTGATACCTATATGGAATGAAATTTGTATCTAAATGTTGATGGTAACTGCAGAACTGAAATTATTCAATGTTGACTGATTAACAGCTGTTTCGAAAGGTTTgactgctgacagacaaacttctacttttacttctgAAGGAAGCGAAAGTAGCAGAAGCAGAGAATTATAAAACCAAAACAGGGAGGGATGACTTACAGCACgaagaaagaaataaagtatCTGTATGCATTTCTGTGTATGTTCTGTCCCATACAAGCCAAGACTTGTATCTGGGTCATTTGGCAGATGTCCAGAATTCTCATTTGTGTTGTTCAAACACAAACTGCATTAGACCAGATCAATATACTCACCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640462.1 True 710 lncRNA 0.37 2 17839902 17840952

Neighbor

gene id symbol gene type direction distance location
fgf1a LOC102791635,LOC100693787,LOC101468745 coding upstream 4739 17831893 ~ 17835163 (+)
nr3c1 LOC103359143 coding upstream 10391 17798656 ~ 17829511 (+)
fgf16 fgf16 coding upstream 163106 17670197 ~ 17676796 (+)
uprt uprt coding upstream 216358 17618542 ~ 17623544 (+)
LOC120566523 LOC108240568,LOC103359160,LOC106514372 coding upstream 335630 17500411 ~ 17504272 (+)
LOC120567299 sept8 coding downstream 23492 17864444 ~ 17881876 (+)
ccng1 ccng1 coding downstream 41531 17882483 ~ 17887495 (+)
gabrb2a gabrb2,LOC102788768 coding downstream 59019 17899971 ~ 17933474 (+)
atp10b atp10b,LOC104956132 coding downstream 99348 17940300 ~ 17958880 (+)
atp7a atp7a coding downstream 128936 17969888 ~ 17987028 (+)
G105688 NA non-coding upstream 130733 17705876 ~ 17709169 (+)
G105685 NA non-coding upstream 140175 17697763 ~ 17699727 (+)
G105676 atrx,LOC102794659 non-coding upstream 157271 17679699 ~ 17682631 (+)
G105667 NA non-coding upstream 214114 17586017 ~ 17625788 (+)
G105652 NA non-coding upstream 333873 17505823 ~ 17506029 (+)
G105743 LOC102790791,LOC101467139 non-coding downstream 16158 17857110 ~ 17859633 (+)
G105791 NA non-coding downstream 127798 17968750 ~ 17968955 (+)
LOC120567419 NA non-coding downstream 150666 17991618 ~ 17994385 (+)
G105798 NA non-coding downstream 160483 18001435 ~ 18001780 (+)
G105843 NA non-coding downstream 218074 18059026 ~ 18059681 (+)
G105677 NA other upstream 154203 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 375680 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 479640 17357508 ~ 17360262 (+)
G105542 NA other upstream 688395 17141983 ~ 17151507 (+)
G105536 NA other upstream 712117 17126355 ~ 17127785 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other downstream 49218 17890170 ~ 17899731 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other downstream 1122982 18963934 ~ 18969946 (+)
G106237 spock1 other downstream 1763888 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 2187911 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 2510769 20351721 ~ 20352167 (+)

Expression


Co-expression Network