LOC120566523 (LOC108240568,LOC103359160,LOC106514372)


Basic Information

Item Value
gene id LOC120566523
gene name LOC108240568,LOC103359160,LOC106514372
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17500411 ~ 17504272 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813047.1
ATGCCTCTATTGCTGGCTCTGCCCTGTTCCTCCCAGGCCAGTGTCATAGCCCTGGATTATATAAAGCAGAAAACCATTAGACCAGTGTTGGCTGTCAGAGGACTGCATAAATCTGCAGTGGAAGTCTTGAGGCGCCCGGCCCCTGAGGACACAGTCACAGCCAGCTTTGGGAAGTTCATCAGTGAAGTAAAGCCCCAGCACTTGTCCTCTGTGGTGCTCCACCGCAGTAAAAGGATGGTGCTGGACAGCATTGGAGTTGGTGTGATTGGCAGCACAACAGACGTGTTTGAGCTGGCTCTGCAGCACTGCCAGCACATGTATGCTCCTGATGACATCAGCTCTGTGTACGGACGCAGGGGCACCAGGCTCTCCCCGACACTGGCAGCTTTCGTCAATGGAGTGGCTactCACTCCATGGACTTTGATGATACATGGCACCCTGCCACTCATCCCTCAGGAGCAGTCCTTCCTGCTGTGTTAGCACTCAGTGACATGATGTCTGCTAACAGCAAACCCAGTGGCCTGGACTTCCTGCTGGCGTTCAACATCGGCATTGAGATCCAGGGCAGATTGATGAGGTTCTCTAATGAGGCCCACAACATCCCCAAGAGGTTTCACCCTCCCAGTGTGGTGGGGACCATGGGAAGTGCAGCCGCCTGTGCTCGCCTCTTGTCTTTGGATCCCTCCCAGTGCAGTCATGCCTTGGCTATAGCTACTTCTCTATCTGGAGCCCCAATGGCTAATGCTGCCACTCAGTCTAAACCACTCCACATCGGTAATGCCTCACGTTTGGGGCTGGAGGCTGCTCTGCTAGCATCCAGAGGCCTAGAGGCGAGTTCTCTGGTCCTGGATGCTGTCACTGGTGTGGCTGGTTTCAATGCTTTTTATGAAGACTATGTACCGCAGCCTTTAGAATTATCCAATGATGACGGCCATATGTTCCTACTAGAGGAGCAGGACATGGCCTTCAAGCGCTTCCCTGCCCATCTAGGGATGCACTGGGTGGCAGATGCTGCAGCCTCGGTCCATAAGATTCTTGTGGGATTTGGCCCTGGCACTGTCTCCCCAGCTCAAGTCCAAGACATCCTGCTCAGGGTCCCCAAATCAAAGTACATCAACAGGCCTTTTCCTGACTCTGAGCATGAGGCACGCCACTCTTTCCAATTCAATGCTTGCAGCGCTCTCCTGGATGGGGAGGTGACTGTGCAGTCTTTCACACCCGCTGCCTTAAGACGCCCTGACCTACTCGCTCTGCTGAGCCGTGTTCGCATGGAGCATCCCCAAGACAACCCAGCTAATTTTAACAGTATGTATGGTGAAGTCCAGGTGACACTTGTTGGGGGAGACATTCTGAAGGGACACTGTGACACCTTCTACGGTCACTGGCGCAACCCGCTAACCAATGAGAGCCTGAGGAAGAAGTTCAGAAACAACGCGGGGGCCGTGCTTCCCTCAGAGAAGGTTGAGAGGCTGATTGATGTGGTGGAGGAGCTGGACAGACTTGGGGACTGCAGGGCCCTTCTCTCACAGCTGCAATGAGAACTCAGACATACACAATGAGAGCAGCA

Function

NR:

description
PREDICTED: cis-aconitate decarboxylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813047.1 True 1568 mRNA 0.54 6 17500411 17504272

Neighbor

gene id symbol gene type direction distance location
LOC120567257 LOC104923207,LOC108240567,LOC108240539,LOC107089023 coding upstream 50455 17445592 ~ 17449956 (+)
LOC120566522 LOC107373325,LOC103391192,LOC108240538 coding upstream 136836 17360382 ~ 17363575 (+)
zgc:174917 LOC103359158 coding upstream 160522 17337695 ~ 17339889 (+)
si:ch211-153b23.7 LOC104923197,LOC103359159,LOC104943958 coding upstream 164506 17329835 ~ 17335905 (+)
rhogd rhog,LOC104923191,LOC103370722,LOC101076287 coding upstream 439421 17057280 ~ 17060990 (+)
uprt uprt coding downstream 114270 17618542 ~ 17623544 (+)
fgf16 fgf16 coding downstream 165925 17670197 ~ 17676796 (+)
nr3c1 LOC103359143 coding downstream 294384 17798656 ~ 17829511 (+)
fgf1a LOC102791635,LOC100693787,LOC101468745 coding downstream 327621 17831893 ~ 17835163 (+)
LOC120567299 sept8 coding downstream 360172 17864444 ~ 17881876 (+)
G105595 NA non-coding upstream 175714 17324468 ~ 17324697 (+)
G105593 NA non-coding upstream 201423 17298543 ~ 17298988 (+)
G105591 NA non-coding upstream 203240 17296575 ~ 17297171 (+)
LOC120566904 NA non-coding upstream 334517 17164283 ~ 17165894 (+)
G105579 NA non-coding upstream 337813 17159538 ~ 17162598 (+)
G105651 NA non-coding downstream 845 17505117 ~ 17505345 (+)
G105652 NA non-coding downstream 1551 17505823 ~ 17506029 (+)
G105667 NA non-coding downstream 81745 17586017 ~ 17625788 (+)
G105676 atrx,LOC102794659 non-coding downstream 175427 17679699 ~ 17682631 (+)
G105685 NA non-coding downstream 193491 17697763 ~ 17699727 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 36189 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 140149 17357508 ~ 17360262 (+)
G105542 NA other upstream 348904 17141983 ~ 17151507 (+)
G105536 NA other upstream 372626 17126355 ~ 17127785 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other upstream 543001 16951012 ~ 16957410 (+)
G105677 NA other downstream 178647 17682919 ~ 17685699 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other downstream 385898 17890170 ~ 17899731 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other downstream 1459662 18963934 ~ 18969946 (+)
G106237 spock1 other downstream 2100568 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 2524591 20028863 ~ 20061338 (+)

Expression


Co-expression Network