G105542


Basic Information

Item Value
gene id G105542
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17141983 ~ 17151507 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU141723
TTACATTAGACACTATTTTGTCCTGATAAAATCAGTCGaatatgcttaaaaaaaaaaaaaataaagacggTTTAGCAAGacaaaatatacacaaacaaCTCAAAGTTTGAGATCcatttttattataaaagaaacaaaatcatGTGTTTTTAGAACATTTCCTGCATGGCAACAAGGAACCTTACAAGATTTTGATTCTTTTAAAAGGTTCATTGAATGGAAATACTTAATTAACTTGTCACATCGTTTTATTACTCCATTCAGTCCTTTCTAAACAGCATGAAAAAGCACAATAGAGTACACCCATTTCTTTAAATTTACATGGGATTACAGACAAAATTTTCACCCATAGGATCAGCCCAAACACcatttaataaaacatgaaaacacaggAATAGGCAGATATGCTGGACAGGATTCCTAAATGGAGGAAGAGCAGGTCTCAACAAGAAGAATCATGAAAAGGTGTTTCCCCTTTTACTTCTTCCCCTCTTTCATGGCTTTCTTCTCTGCTTCAATtCCGCAGCAGTTGGACGATGGTTACTTTCTTTCGTGATAGACTTCCTTAGCTTGCTCGTCTTAAACTGCACCAACTCCTCATTGAGTGGCTCTTTGGCAGCTCTTCCAAAGCTATCTTCTCTTCTTCAATTACTTGCGTCGTTGGGAGAGGGTTTTTTTCTACCACTTCAGTACTATTTAGCCTTTCCTTTTTAAACTGCTGCACCTCCTTAGTGATTGGACATTTGTTGCTCATTTTGGAAGATTCTGGAGCAGAGGTGCGCAGGTTCTGTTGTATGAAAATGCGTCT
>TU141724
TTACATTAGACACTATTTTGTCCTGATAAAATCAGTCGaatatgcttaaaaaaaaaaaaaataaagacggTTTAGCAAGacaaaatatacacaaacaaCTCAAAGTTTGAGATCcatttttattataaaagaaacaaaatcatGTGTTTTTAGAACATTTCCTGCATGGCAACAAGGAACCTTACAAGATTTTGATTCTTTTAAAAGGTTCATTGAATGGAAATACTTAATTAACTTGTCACATCGTTTTATTACTCCATTCAGTCCTTTCTAAACAGCATGAAAAAGCACAATAGAGTACACCCATTTCTTTAAATTTACATGGGATTACAGACAAAATTTTCACCCATAGGATCAGCCCAAACACcatttaataaaacatgaaaacacaggAATAGGCAGATATGCTGGACAGGATTCCTAAATGGAGGAAGAGCAGGTCTCAACAAGAAGAATCATGAAAAGGTGTTTCCCCTTTTACTTCTTCCCCTCTTTCATGGCTTTCTTCTCTGCTTCAATtCCGCAGCAGTTGGACGATGGTTACTTTCTTTCGTGATAGACTTCCTTAGCTTGCTCGTCTTAAACTGCACCAACTCCTCATTGAGTGGCTCTTTGGCAGTTTCCTCTTCCATGGCTATCTTCTCTTCTTCAATTACTTGCGTCGTTGGGAGAGGGTTTTTTTCTACCACTTCAGTACTATTTAGCCTTTCCTTTTTAAACTGCTGCACCTCCTTAGTGATTGGACATTTGTTGCTCATTTTGGAAGATTTCTAATTGAGAAAAGTgagagagcaaaaaaaaacaaaaaataaaaaacacattaaatcaaaacaaagcatttttttatttaattttttttaacgctgTATTTGGGAGTAATGAACTCCAAcgtaattaaacaaataactacaTTTTGCTGGTAGTACAactacacacttcctgtctcttaAGTGGGAGTAGCcgcatttgaaaatgtaatgaaTGTTATTTGGATAATTtattaacattttcttttgctaacattagatatttacacaaCTAAAAGATGAAAATTAGTTTGGGCATTCACAAACATTAGCTTATCCGTGTTGCCAGATCTCAAGAGTTTGTTCCCGAGTCTGAAATAGGTCTTGAACAAAGTTAGTTTTCTCCAGATTGGTctgtctgaaaaatgccattttagtgtcagaatatTCAGGAGGTAGAGTTTGTGAAAAATGGGTCCTATATTTACTTAGGCGACTATGGGGCGAAAGAATTGGTCATAATCttgtgttcacgttcacttctcccattggaaaaaataaaaaaatactacaCTCAGGATCTGCCACTAGTCTCCTAAATAGGCGTGGCAGTGGAGAAACCcatgtgacacagatacaggaaattACTCTCAGTTGGGGCGTCTCTGGTACTAGTGAAACTACAAATAATGTTGGCccataaaagtaaaaagaattatttattttttaaactttattttaccATTGCTTCCCTACTATAATTTAAC
>TU141725
TTACATTAGACACTATTTTGTCCTGATAAAATCAGTCGaatatgcttaaaaaaaaaaaaaataaagacggTTTAGCAAGacaaaatatacacaaacaaCTCAAAGTTTGAGATCcatttttattataaaagaaacaaaatcatGTGTTTTTAGAACATTTCCTGCATGGCAACAAGGAACCTTACAAGATTTTGATTCTTTTAAAAGGTTCATTGAATGGAAATACTTAATTAACTTGTCACATCGTTTTATTACTCCATTCAGTCCTTTCTAAACAGCATGAAAAAGCACAATAGAGTACACCCATTTCTTTAAATTTACATGGGATTACAGACAAAATTTTCACCCATAGGATCAGCCCAAACACcatttaataaaacatgaaaacacaggAATAGGCAGATATGCTGGACAGGATTCCTAAATGGAGGAAGAGCAGGTCTCAACAAGAAGAATCATGAAAAGGTGTTTCCCCTTTTACTTCTTCCCCTCTTTCATGGCTTTCTTCTCTGCTTCAATtCCGCAGCAGTTGGACGATGGTTACTTTCTTTCGTGATAGACTTCCTTAGCTTGCTCGTCTTAAACTGCACCAACTCCTCATTGAGTGGCTCTTTGGCAGCTCTTCCAAAGCTATCTTCTCTTCTTCAATTACTGTGGGATTAcaagggagacagacagaggtgaTCAATGTATAACTGAGTCGTAGATTAAATCAACATTCAGAGATTTCGTTTAAGTTGCAGTTCACATCCATGTCTATCCAGGCTCATAATATATGTAGTGACGACTTgagcaataataaaataaaaaaacaaaataaaagtgcattctttggcaatattttgttttttaaagatttttggggcattttagcctTGGACAGgagagatgaagacatgaaaggggagagagagggggaatGTGTGCATTGGCACTGCCCTTACAATTCGATtacgattcgattcaattctACGATGCATCAAAATTCTACTGCACATAacaaggcaaatttttcatCAGTCATGAGGCAATCAGTCAGATATCCTGTTAAAATTCGGCTGAAATTTCATGCTTTTTGGACTAAACgacatacccaaattaaaagtggtacagctcccacatactttgacactctggggtgtgcctgacatcattggaaaggaaacactcaattTTTTGAGtgtcagggtgattctaggccttactgacacagagttacagaggctagaatggaggTTTTTTATTTCCGTCATACATCTCtaaaatgatcaaaataaaatactgtaaacacatctggtgatatacagatacacccaGGCCATAGCAACATGTCTCAGGttattatagaaaaaaaatccagatgccaaaagactcaaaaattgatttttctacagaaatgtCTGTCCGTTTTGCTGTCATCGGCTTGTCAGCTTtcattggccatatcagaggcaaacctgaacggattggctcATATGAGATGTCTATCAaaagcttagaagctagggaatTCGATGACGCCCACTTTGAGCATGtaacaagctgggcagagaagctagcggcgataacaagtgcggaaatggaaaattgtttcgagtttttccgttgtgattcggccagaaacttcaacattgtgaggcgaacagatctttttggaatataaagcttggatattacatttccttggactcttggggatttatgaaaatcaagttttgggcaacataccactttgttgctgaaaggacaacgaaaacaggtatggatgcactctcgacagctgcgcagattatggctgaattgttttagaggctaagctttcaattggtgtgtatatttggaagatttaatgctttaaagttataaaaacgctcatgagtggaagttttatcgaggttacagcgacgcagtgtcccTTCAACGGGACAGTGATCCGAGAGGACATTGAACAACAGATTTTATTGGctgctatgtgtgtattatcacTTTCCTGTATCTTTGATACAGAAGTAATTGAAActttacaactttattgtccactcaaggcCAGAAAATAAACCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141723 False 808 lncRNA 0.37 5 17141983 17151507
TU141724 False 1513 lncRNA 0.35 4 17141983 17150165
TU141725 True 2063 TUCP 0.38 4 17141983 17145859

Neighbor

gene id symbol gene type direction distance location
rhogd rhog,LOC104923191,LOC103370722,LOC101076287 coding upstream 80993 17057280 ~ 17060990 (+)
fhdc2 LOC104948384,LOC103370727 coding upstream 86352 17045750 ~ 17055631 (+)
cetn2 cetn2,LOC103391147,LOC102228171,LOC101061582 coding upstream 143019 16996639 ~ 16998964 (+)
fut11 fut11 coding upstream 170682 16965058 ~ 16971301 (+)
pcdh20 LOC103370723,LOC104948493 coding upstream 193287 16945275 ~ 16948696 (+)
si:ch211-153b23.7 LOC104923197,LOC103359159,LOC104943958 coding downstream 178328 17329835 ~ 17335905 (+)
zgc:174917 LOC103359158 coding downstream 186188 17337695 ~ 17339889 (+)
LOC120566522 LOC107373325,LOC103391192,LOC108240538 coding downstream 208875 17360382 ~ 17363575 (+)
LOC120567257 LOC104923207,LOC108240567,LOC108240539,LOC107089023 coding downstream 294085 17445592 ~ 17449956 (+)
LOC120566523 LOC108240568,LOC103359160,LOC106514372 coding downstream 348904 17500411 ~ 17504272 (+)
G105532 NA non-coding upstream 23712 17117736 ~ 17118271 (+)
G105509 ogt.1,ogt non-coding upstream 125970 17013750 ~ 17016013 (+)
G105506 NA non-coding upstream 130476 17009731 ~ 17011507 (+)
G105477 NA non-coding upstream 157914 16981483 ~ 16984069 (+)
G105442 NA non-coding upstream 387973 16753811 ~ 16754010 (+)
G105579 NA non-coding downstream 8031 17159538 ~ 17162598 (+)
LOC120566904 NA non-coding downstream 12776 17164283 ~ 17165894 (+)
G105591 NA non-coding downstream 145068 17296575 ~ 17297171 (+)
G105593 NA non-coding downstream 147036 17298543 ~ 17298988 (+)
G105595 NA non-coding downstream 172961 17324468 ~ 17324697 (+)
G105536 NA other upstream 14198 17126355 ~ 17127785 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other upstream 184573 16951012 ~ 16957410 (+)
nlgn3a nlgn3 other upstream 215349 16799783 ~ 16926634 (+)
vma21 vma21 other upstream 636325 16497300 ~ 16505658 (+)
stc2a stc2 other upstream 2171859 14895961 ~ 14970124 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other downstream 206001 17357508 ~ 17360262 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other downstream 306740 17458247 ~ 17464222 (+)
G105677 NA other downstream 531412 17682919 ~ 17685699 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other downstream 738663 17890170 ~ 17899731 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other downstream 1812427 18963934 ~ 18969946 (+)

Expression


Co-expression Network