G105506


Basic Information

Item Value
gene id G105506
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17009731 ~ 17011507 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU141674
ACCATGGGTGTTCCAGCCCAGAGAACATCCATGCCTGTGGTGTGACCATTGCACAGAGGTGTGTCGAGGCACACATCAGCCAGCTGGCCCCTCCTCACATGCTCCTCCTTGGGGGCCACAGGAGAAAAGATGATGCGAGAGCCAGGCACACCCATGTTCTGGGCATACTGCTGGATGTTGGGCTCGCCGACAGCAGGGAAGCGGAGAAGCCACAGAACGCTGTTGGGCACACGCTTTAGGATATTAGCCCACATCTGAAGAGTAGGGGGGTCAATCTTGTAGAGCTGGTTAAAGTTGCAGTAGACAATGGAGTCCTCTGGGAGACCATACTGGGAGCGGGTTGTCACAACGATTGTGCGTGGCACCTCCTCCCCAGTGGCAGCTTTGTTGTTGATCTGTGTGGTGGCCAGGCCATTGCTGACAGTGAAGCCATTGATTGTGACCTGGATTTGGCCTTGGTTGATCATGTTGATGATGGCTTCGGCTGCTGTGTTCATGGGGATTACGGGCATGGTCAGAGCTCCATTTGTGTCCCCAGCAGCTTCCTGGTTGTTGTCACACTTCATCTTTATCACTTTCACATCCGGCAGACTGTCCAAGTAGGCCTTCAGATCAATACCATTAAGCACGATGCGGTTGTCAAAGATGTGTCCATTAGATTTGAAATCAATCACTGCCTTTTCTTGAGGTGAGGGAACATGTTGGCGTGGTCTCCGATAAAGAAAGTATGGGGCATGTAAGCCAGTTTTTCTGAATACTGCTCAGCTACTTCCAAAGGGGATGTCTCCTTGTCAGAGATGATGTAGTCCATGAAGGGAGCCCCACTGGTTCCAGGGTAACCCAGCCACATAGT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

RNA

RNA id representative length rna type GC content exon number start site end site
TU141674 True 853 lncRNA 0.52 5 17009731 17011507

Neighbor

gene id symbol gene type direction distance location
cetn2 cetn2,LOC103391147,LOC102228171,LOC101061582 coding upstream 10767 16996639 ~ 16998964 (+)
fut11 fut11 coding upstream 38430 16965058 ~ 16971301 (+)
pcdh20 LOC103370723,LOC104948493 coding upstream 61035 16945275 ~ 16948696 (+)
mtnr1c gpr50,LOC104936099,LOC108242047 coding upstream 528539 16468933 ~ 16481192 (+)
neurl1b neurl1b coding upstream 549639 16447325 ~ 16460092 (+)
fhdc2 LOC104948384,LOC103370727 coding downstream 34243 17045750 ~ 17055631 (+)
rhogd rhog,LOC104923191,LOC103370722,LOC101076287 coding downstream 45773 17057280 ~ 17060990 (+)
si:ch211-153b23.7 LOC104923197,LOC103359159,LOC104943958 coding downstream 318328 17329835 ~ 17335905 (+)
zgc:174917 LOC103359158 coding downstream 326188 17337695 ~ 17339889 (+)
LOC120566522 LOC107373325,LOC103391192,LOC108240538 coding downstream 348875 17360382 ~ 17363575 (+)
G105477 NA non-coding upstream 25662 16981483 ~ 16984069 (+)
G105442 NA non-coding upstream 255721 16753811 ~ 16754010 (+)
G105437 NA non-coding upstream 312550 16696722 ~ 16697181 (+)
G105434 NA non-coding upstream 321141 16688155 ~ 16688590 (+)
G105432 NA non-coding upstream 322001 16687483 ~ 16687730 (+)
G105509 ogt.1,ogt non-coding downstream 2243 17013750 ~ 17016013 (+)
G105532 NA non-coding downstream 106229 17117736 ~ 17118271 (+)
G105579 NA non-coding downstream 148031 17159538 ~ 17162598 (+)
LOC120566904 NA non-coding downstream 152776 17164283 ~ 17165894 (+)
G105591 NA non-coding downstream 285068 17296575 ~ 17297171 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other upstream 52321 16951012 ~ 16957410 (+)
nlgn3a nlgn3 other upstream 83097 16799783 ~ 16926634 (+)
vma21 vma21 other upstream 504073 16497300 ~ 16505658 (+)
stc2a stc2 other upstream 2039607 14895961 ~ 14970124 (+)
atp6v0e1 atp6v0e1 other upstream 2118236 14889235 ~ 14891495 (+)
G105536 NA other downstream 114848 17126355 ~ 17127785 (+)
G105542 NA other downstream 130476 17141983 ~ 17151507 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other downstream 346001 17357508 ~ 17360262 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other downstream 446740 17458247 ~ 17464222 (+)
G105677 NA other downstream 671412 17682919 ~ 17685699 (+)

Expression


Co-expression Network