atp6v0e1 (atp6v0e1)


Basic Information

Item Value
gene id atp6v0e1
gene name atp6v0e1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 14889235 ~ 14891495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU140972
TGGACCCTTGTCTGGCAGCTGGACAGGATACTGAAGTTGTCTCGAGTCACAACTTTTTACCTCGGAGATATTCTTGGTTTTAAAAGAAGAACGCCACCATGGCGGAACTAGGTTTTGTGATCGCCATATCTGTGATGACTCTGTTTTGGGGCATTATTGGCGGAGTAGTGCCCTGGTTTATCCCTAAGGGACCAAATAGAGGAGTGATAGTCACAATGCTGGTGTTGACTGCAGTCTGCTGCTACCTGTTCTGGTTGATAGCAATTCTGGCCCAGTTGAACCCACTTTTCGGCCCTTCTCTGTCCACTGACACCATCTGGTACCTGAACTATCACTGGCCTTAATTTACTCTCCCAGGACTCCCCACCAAGCAGGGGGAGGACCTGCCACTGCTGCATACCAACGGATGTTTGCTTCTGACTTCATGCAGAGATCATTCCTTCTGAATCACCTTAAGCTCAGACCCCTGTGCAATTTACTGAGTGACGCCCACACTGGTGCCTTAAACAAAAATTCCCAAAGGACTTCTGAGTGATCTCACTGAATGTGCTTTACTTTAAATTAAAGCAACCTTCACTTGTTGTATGGTTATATTATGTATATTGTGTTTATTGTTCATATTGATGGCCGTGCCTTTAAATAGTtgatgtgtggtgtgtttgaTGTTATCTTTTTTTGTCTGATAATATTAGTAATGGATGCAATCCTCTCAACAGTTGTGAATTAATAAACTAATAATCAACCCA
>XM_039813870.1
TCATGTGATACACACTGTGTGTGGACCCTTGTCTGGCAGCTGGACAGGATACTGAAGTTGTCTCGAGTCACAACTTTTTACCTCGGAGATATTCTTGGTTTTAAAAGAAGAACGCCACCATGGCGGAACTAGGTTTTGTGATCGCCATATCTGTGATGACTCTGTTTTGGGGCATTATTGGCGGAGTAGTGCCCTGGTTTATCCCTAAGGGACCAAATAGAGGAGTGATAGTCACAATGCTGGTGTTGACTGCAGTCTGCTGCTACCTGTTCTGGTTGATAGCAATTCTGGCCCAGTTGAACCCACTTTTCGGCCCTTCTCTGTCCACTGACACCATCTGGTACCTGAACTATCACTGGCCTTAATTTACTCTCCCAGGACTCCCCACCAAGCAGGGGGAGGACCTGCCACTGCTGCATACCAACGGATGTTTGCTTCTGACTTCATGCAGAGATCATTCCTTCTGAATCACCTTAAGCTCAGACCCCTGTGCAATTTACTGAGTGACGCCCACACTGGTGCCTTAAACAAAAATTCCCAAAGGACTTCTGAGTGATCTCACTGAATGTGCTTTACTTTAAATTAAAGCAACCTTCACTTGTTGTATGGTTATATTATGTATATTGTGTTTATTGTTCATATTGATGGCCGTGCCTTTAAATAGTtgatgtgtggtgtgtttgaTGTTATCTTTTTTTGTCTGATAATATTAGTAATGGATGCAATCCTCTCAACAGTTGTGAATTAATAAACTAATAATCAACCCAATTGGTCCATAA

Function

symbol description
atp6v0e1 Predicted to enable hydrolase activity and proton transmembrane transporter activity. Acts upstream of or within embryonic retina morphogenesis in camera-type eye and optokinetic behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proton-transporting V-type ATPase, V0 domain. Used to study blindness. Orthologous to human ATP6V0E1 (ATPase H+ transporting V0 subunit e1).

NR:

description
PREDICTED: V-type proton ATPase subunit e 1

GO:

id name namespace
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02153 ATPeV0E, ATP6H; V-type H+-transporting ATPase subunit e

RNA

RNA id representative length rna type GC content exon number start site end site
TU140972 False 746 lncRNA 0.43 4 14889256 14891483
XM_039813870.1 True 779 mRNA 0.43 4 14889235 14891495

Neighbor

gene id symbol gene type direction distance location
rpl26 rpl26l1,rl26,LOC100708525,LOC105024418,LOC107381811,LOC103040128,LOC106521912 coding upstream 1064 14883814 ~ 14888171 (+)
adam19b adam19 coding upstream 77970 14789362 ~ 14811265 (+)
zgc:113425 NA coding upstream 127289 14756244 ~ 14761946 (+)
setd7 setd7 coding upstream 133895 14748836 ~ 14755340 (+)
zgc:154054 NA coding upstream 158662 14703215 ~ 14730573 (+)
bnip1a bnip1,LOC101483240,LOC102202434,LOC102780069 coding downstream 391 14891886 ~ 14897830 (+)
LOC120566895 cpeb4,LOC103355681,LOC107086066 coding downstream 86305 14977800 ~ 14990313 (+)
LOC120567085 NA coding downstream 116460 15007955 ~ 15010090 (+)
pin4 pin4 coding downstream 162890 15054385 ~ 15058181 (+)
faf2 faf2 coding downstream 167526 15059021 ~ 15066799 (+)
G104982 LOC108245816 non-coding upstream 43639 14841497 ~ 14845596 (+)
G104939 NA non-coding upstream 152662 14735180 ~ 14736573 (+)
G104898 NA non-coding upstream 286416 14602105 ~ 14602819 (+)
G104872 NA non-coding upstream 303899 14527138 ~ 14585336 (+)
G104884 NA non-coding upstream 307268 14580372 ~ 14581967 (+)
G105034 NA non-coding downstream 118846 15010341 ~ 15010631 (+)
G105066 NA non-coding downstream 195089 15086584 ~ 15090581 (+)
G105085 NA non-coding downstream 242047 15133542 ~ 15134820 (+)
LOC120567003 NA non-coding downstream 259378 15150873 ~ 15153052 (+)
LOC120567004 NA non-coding downstream 309446 15200941 ~ 15204702 (+)
hspa9 hspa9 other upstream 106569 14767371 ~ 14782666 (+)
rell2 NA other upstream 251811 14618394 ~ 14637424 (+)
LOC120566515 NA other upstream 2855403 12028625 ~ 12033832 (+)
mgarpa mgarp other upstream 2859732 12006515 ~ 12029503 (+)
ndufc1 ndufc1,LOC102793397 other upstream 2887585 11997261 ~ 12001650 (+)
stc2a stc2 other downstream 4466 14895961 ~ 14970124 (+)
vma21 vma21 other downstream 1605805 16497300 ~ 16505658 (+)
nlgn3a nlgn3 other downstream 1908288 16799783 ~ 16926634 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other downstream 2059517 16951012 ~ 16957410 (+)
G105536 NA other downstream 2234860 17126355 ~ 17127785 (+)

Expression


Co-expression Network