pin4 (pin4)


Basic Information

Item Value
gene id pin4
gene name pin4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15054385 ~ 15058181 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812574.1
agaagaaacacttGAGCAGTCGGCGCAGGGGTTTCTGCGCATGTTAACCACAACACAGCATGAGCGCATGCTATTGccgttttctctttttcatcattaCTTCAACATTTCAGTAAACGTTCATCTAAAATGCCACCAAAGGGAAAAGGTGGCAAGGGTGGTAAAGGAGCGGCTTCAGGAAGTGCAGACGCTGACAAAAAACAAGAGAAAGCCCCAAAGGGAGGCACTGCTGTCAAGGTTCGACACATCCTCTGTGAAAAACATGGGAAATGCATGGAGGCAATGGAGAAACTGAAGGCTGGAGTCCGTTTCAGTGAAGTAGCGTCACAATACAGTGAAGACAAAGCGAGACAAGGAGGTGATCTGGGGTGGATGACGCGAGGATCGATGGTTGGACCTTTCCAGGATGCAGCGTTCGCCCTACCTGTCAGTTCCATGGATAAACCAAACTACACAGACCCTCCTGTCAAGACCAAGTTTGGGTACCACATCATTATGGTAGAGGGGAAAAAGTGACGTGAGGTGGCTCACCACTTGGAATTAGGACCTACAAATTCTACAGTGTGCTATATTGTGAAACTGATTATTTCCTGATCTTACCGTTTTGATGCAACGTTTGCTTTTTATTCTACAAAATGTTTAAGAATAAGAAAATGAAATGATCCCTTTTGTTCAAATGTACACTACCTTACTGACAATTCAACCTGAGGGAATATTCTTACACGATTAACTTTCACATTTACATAATTcgctggattttctttttgagttTGATAAAGATTGTGGGAATCAAACCACGAACGGCCAAATAAAAGAATTTCTTTTCACTAGTA

Function

symbol description
pin4 Predicted to enable DNA binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm; nucleolus; and spindle. Orthologous to human PIN4 (peptidylprolyl cis/trans isomerase, NIMA-interacting 4).

NR:

description
peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K09579 PIN4; peptidyl-prolyl cis-trans isomerase NIMA-interacting 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812574.1 True 833 mRNA 0.43 4 15054385 15058181

Neighbor

gene id symbol gene type direction distance location
LOC120567085 NA coding upstream 44295 15007955 ~ 15010090 (+)
LOC120566895 cpeb4,LOC103355681,LOC107086066 coding upstream 64072 14977800 ~ 14990313 (+)
bnip1a bnip1,LOC101483240,LOC102202434,LOC102780069 coding upstream 156555 14891886 ~ 14897830 (+)
rpl26 rpl26l1,rl26,LOC100708525,LOC105024418,LOC107381811,LOC103040128,LOC106521912 coding upstream 166214 14883814 ~ 14888171 (+)
adam19b adam19 coding upstream 243120 14789362 ~ 14811265 (+)
faf2 faf2 coding downstream 840 15059021 ~ 15066799 (+)
cdhr2 NA coding downstream 53756 15111937 ~ 15127433 (+)
lrrtm2 lrrtm2,LOC103471148 coding downstream 431568 15489749 ~ 15495279 (+)
LOC120566311 LOC102208083,LOC100712192,LOC101476853,LOC102798294,LOC102307272 coding downstream 504229 15562410 ~ 15567521 (+)
gpx3 gpx3,LOC103376216 coding downstream 635324 15693505 ~ 15698165 (+)
G105034 NA non-coding upstream 43754 15010341 ~ 15010631 (+)
G104982 LOC108245816 non-coding upstream 208789 14841497 ~ 14845596 (+)
G104939 NA non-coding upstream 317812 14735180 ~ 14736573 (+)
G104898 NA non-coding upstream 451566 14602105 ~ 14602819 (+)
G104872 NA non-coding upstream 469049 14527138 ~ 14585336 (+)
G105066 NA non-coding downstream 28403 15086584 ~ 15090581 (+)
G105085 NA non-coding downstream 75361 15133542 ~ 15134820 (+)
LOC120567003 NA non-coding downstream 92692 15150873 ~ 15153052 (+)
LOC120567004 NA non-coding downstream 142760 15200941 ~ 15204702 (+)
G105112 NA non-coding downstream 305452 15363633 ~ 15363940 (+)
stc2a stc2 other upstream 84261 14895961 ~ 14970124 (+)
atp6v0e1 atp6v0e1 other upstream 162890 14889235 ~ 14891495 (+)
hspa9 hspa9 other upstream 271719 14767371 ~ 14782666 (+)
rell2 NA other upstream 416961 14618394 ~ 14637424 (+)
LOC120566515 NA other upstream 3020553 12028625 ~ 12033832 (+)
vma21 vma21 other downstream 1439119 16497300 ~ 16505658 (+)
nlgn3a nlgn3 other downstream 1741602 16799783 ~ 16926634 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other downstream 1892831 16951012 ~ 16957410 (+)
G105536 NA other downstream 2068174 17126355 ~ 17127785 (+)
G105542 NA other downstream 2083802 17141983 ~ 17151507 (+)

Expression


Co-expression Network