G105066


Basic Information

Item Value
gene id G105066
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15086584 ~ 15090581 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU141071
GGAAAAAATGAGGTAACTGTAAATGTGCAAGTACCAAAGCAAAATATCTGCCTAACACAGAACACATGCCCCAGGCTCTGTTGGCGGGTGGGTAGTCTGGTGTTCAGGCAAGGACCCCTAGAGGCCAGGGAGAGTAAGAACAGTAAACCACTATCCCACCACAGCAAAAAGTCATTGGTAAACAATAAATGGCATCTACGGAGCAATCAATCACAAATCCTAAATAAATTTTAGCTGCTTATCGGAACACATTTTTGCACCACACAAGCTGTGAGATTATTCAATAACTCTTAACAGAAAGACTACAAGACTCTATTCTCAGTTGTCATTAAAAGTTACCTCATTACCTAGGCCTTAATGGGaggttcttttttatttaatagggTAGCTGgatattgttaaatattaaCTCCAAAATAAGAGTGCTAACATTAACATGAAGGTATCTATATGTGAACAATATATTTTAAGATATTGATACACAGAGCAAGAGCCTGATATGCAGGTACGATACTACACTGAAATAAGTATGACAACACTTgagtcttttttcattttttttttttttttttttaaatcccttaAACTATATTGATTTTCACGGACATTGTTTTAGGGGTATTAATATAACATGCTTTAAGAATACATGGGATCCATGACAAACTATTGCATTCACGCAAGTGAGTTTTCATACCTAAAAGCAGAACATCTAGCACCTTTTCACTATGGCTTTTGATAAACTACAGTAGTTTCAGAGCATGTCATTTTCAGTCGTTAGGGCAAGAACAGTAACACAATGTATGTAAGAATTTCTGGATTCAagaccaggttttttttttctctctataaAATGAAGTTAGCGCAATAAAATCTTGTAGTCATTCAGTTCTATTACAAATGTGTGCAGTACAATGCATGGCAGTTATCAGCTGAGCATTACGATCCAGACCCCCAGAACCCAAAGCCAACTAGAGCTAAAAATCAGTTGGGATCTGGTTGACAAGCATGCATATTGTGCACCATTAAATAGGTCCCCACCAGATTTTGAGATATCCTCCACTACAACACACTTGTTttacccccttttttttttttctccttttttttttccttttttaaagtcATGCAAAACACCTCTGAAGTAGATTTGGGAGTGAATTAGGTAGGATAGTGTGCCTCATGGCACATTTAGAAATGGGATCACAACCGCTATGTGAAACATATGGTTTGAGTAATATAACAAAAGTCAAACAGGTTTGAATAATACACTTGTAATGAGTTGCAGTGTACATTGCCTTGTTTCAGTGAATATTAATAACGTATTTactcatctttttttcttgcatGCCCGTCTTTAAATGATGTATTATCTACTATTTCCGACAAAACTGAATATTATAATTGATTACATTAAATCATTGGCGGTCTGAGGAAAACAATCACGCTAAATTCAGATATACCCTTTTGATGGCATCCTTTCCATTTGAAATGGACTGTTctcctttatttttatataccAAGAGGCCctgagtgatttttttttttcttttttaaaacttacAATATATGCCAGCGAATAGATATGTACACATAGGTTAATTCTCAAAGCTGTGGGTTTAACTCATTAAatggcttctttttttcttttgaaggtGGCACACACATCAAAGACTCACATTCACTTAAGAAACAGAAGTAAAGAAAAAGGCAAGAACCCTTTACACATCAAAGCAAAAGGTTACAAGGTTGCCTGTTAGTGCTTACTGGGCAGTTTAGGGACAAAGCAAAAATCCATTTGTTGCTCTTCTCCCTCCCATCCCAAATGTATCCTTTTTTTAGTGTGAATACAAGCAGGGAACTAGAAGTCTTAACAGTGTTTCTACACTCCTGAACACTCCGTCCGGACCACCGTGGGACACATTTAGCCTAAACGTGAGTGTCACCAGTGACTTCTACAAGGGTTTTCAACATTCGTCTGTCTTCAAACATTTATCTAAAAGCATTCACACTGAAGCTATACATACAGTTGCTCTTTTACAACACCATTACCATTACCATGACCTGACCAAGTTACCAGATTAAAACATACATTATACAAAGATGTTAGTGCTCCAACTGTTTCcttcaatgtatttttttcaagaAGATAAAACcaataaataaactttttttcttctctcttttttttttttttttaaacgccatACTTTTAAAACAAGTGGAAATGATGAAGGTATTTTCAGGATTAGTAATAGGTTTGTGCTTGTCAAGGTCATAAGAAGGCAGATCTGAAATGTTGAACAGTGggctatgtgtgtatattggATTTGGCTcacaaacaatgaaataaaaagccCAGTCTTCCTAAAAGTGGAAGAAATTTCATTTAAAACTCGCCACTCACTGCACATATTGCTTTCTGCACAGGCCTCCAGAGCTTTATGGCATTAGCACAGCCTTCAGATGAGGACTCCCATCCTAAAACGCAGTCAGGTTGGAACCACATGCTAGTCTTCCGTCATGGCGCTCTCTGAATAAGCAAGCAGTTCTCTATTAGTATGCTTCTTTGTCTATTCTTTTTCTTAACATTCGACAATTTTGGTGGCAATGCTTGATTAAAATATTGCTCGTCTGAATCAACAGTTCATGCAAATCCTAGCATGCTGCCCTGTATCCAGTGGTTACACAATGCATTGGCTCTGTGaacaggacaaacacacacacacactcactcacacacacacacacacacacacacacacactatgtacacacacatacacacttgccAGAGGAACAACGCTGACGTGGAGGGTGGATGTAGCACTTGTGCAGTTATGCCAGATGACCTCAAAAAAGACGCAGTCCATTAATCCATGACCGCTTTTGTACAGATCTGTGTTGCAGAGTGGATAATCTGGGGCAGAAGAAACTCCACAGTTGCATGTCCCATCGCTTGCAGTCCATAACCTCAGGCTCAACAGAATCTGCATTTAACCATAGCAAGTCACACTTTCACAACAGAATTGGCAAATCTAAAACAAATTACGGGGTAAAACTGTGAAATGATCAATACATTATTGCAGAACATACATTATTAACAAGTCACTTTGCCCAACACCTACAGAAGCATGCATCTATGATGGCCAGGCGTCGCCTCCAAACACAGATGCACATGTCGAAGTATTCCTATTATTTTTCTGCTAATTGCACAAGGCGTCCAGCCTATCATCCTCCAGGCTCCCGACTCAACTCTTCCGATGCAGGACTCCCACTAGTCATGAACACCACAACCAAATCCACTAAGTAAAAATGAAACCCTGTaaacaaaagcagcaaataATGCATTGTTGGGGAAATCTTTGGAATCTGCAACGAGGGGGCAGAGAAAGAACTGGCTGGCGATCCCAGAACTCTGGCTATAGGCTGCGATAGGCAGTGGGTTTCATGAGACTCGGACAATGAAGCACAGCAGAGGTACAACAGGCTCCAGTAAACAATCCTGGATTGCTTATTATTTAGGAAGGGGCAGGAGTGGTGGGTTGGTAAGCTATATCTACTGGAGGACGCAGGTTAGGTGGCAGATGTCCCCAGTTTTGGGACAGACTCTGTCTGGCGTGTGCAAGCTTTCCAGTTCAGCACTCAGAGACAGTTCTCACTCCACCTCCCGGTGTACATCCGAGGCATCGGCTCGGCAGATGGGACAAGTGCGATTGGTCTGGAAGTCAAGCGGAAACGTGAAGACGTTAAGCgcaacatttcaaaaacattcaCACAATCTATGAGGACACTATGACATCATGTTTTGTTCAAACTGGCATCAACTTACTTTTAACCATTTGTCCACACACTTTGCGTGGAATTCGTG
>TU141072
GGAAAAAATGAGGTAACTGTAAATGTGCAAGTACCAAAGCAAAATATCTGCCTAACACAGAACACATGCCCCAGGCTCTGTTGGCGGGTGGGTAGTCTGGTGTTCAGGCAAGGACCCCTAGAGGCCAGGGAGAGTAAGAACAGTAAACCACTATCCCACCACAGCAAAAAGTCATTGGTAAACAATAAATGGCATCTACGGAGCAATCAATCACAAATCCTAAATAAATTTTAGCTGCTTATCGGAACACATTTTTGCACCACACAAGCTGTGAGATTATTCAATAACTCTTAACAGAAAGACTACAAGACTCTATTCTCAGTTGTCATTAAAAGTTACCTCATTACCTAGGCCTTAATGGGaggttcttttttatttaatagggTAGCTGgatattgttaaatattaaCTCCAAAATAAGAGTGCTAACATTAACATGAAGGTATCTATATGTGAACAATATATTTTAAGATATTGATACACAGAGCAAGAGCCTGATATGCAGGTACGATACTACACTGAAATAAGTATGACAACACTTgagtcttttttcattttttttttttttttttttaaatcccttaAACTATATTGATTTTCACGGACATTGTTTTAGGGGTATTAATATAACATGCTTTAAGAATACATGGGATCCATGACAAACTATTGCATTCACGCAAGTGAGTTTTCATACCTAAAAGCAGAACATCTAGCACCTTTTCACTATGGCTTTTGATAAACTACAGTAGTTTCAGAGCATGTCATTTTCAGTCGTTAGGGCAAGAACAGTAACACAATGTATGTAAGAATTTCTGGATTCAagaccaggttttttttttctctctataaAATGAAGTTAGCGCAATAAAATCTTGTAGTCATTCAGTTCTATTACAAATGTGTGCAGTACAATGCATGGCAGTTATCAGCTGAGCATTACGATCCAGACCCCCAGAACCCAAAGCCAACTAGAGCTAAAAATCAGTTGGGATCTGGTTGACAAGCATGCATATTGTGCACCATTAAATAGGTCCCCACCAGATTTTGAGATATCCTCCACTACAACACACTTGTTttacccccttttttttttttctccttttttttttccttttttaaagtcATGCAAAACACCTCTGAAGTAGATTTGGGAGTGAATTAGGTAGGATAGTGTGCCTCATGGCACATTTAGAAATGGGATCACAACCGCTATGTGAAACATATGGTTTGAGTAATATAACAAAAGTCAAACAGGTTTGAATAATACACTTGTAATGAGTTGCAGTGTACATTGCCTTGTTTCAGTGAATATTAATAACGTATTTactcatctttttttcttgcatGCCCGTCTTTAAATGATGTATTATCTACTATTTCCGACAAAACTGAATATTATAATTGATTACATTAAATCATTGGCGGTCTGAGGAAAACAATCACGCTAAATTCAGATATACCCTTTTGATGGCATCCTTTCCATTTGAAATGGACTGTTctcctttatttttatataccAAGAGGCCctgagtgatttttttttttcttttttaaaacttacAATATATGCCAGCGAATAGATATGTACACATAGGTTAATTCTCAAAGCTGTGGGTTTAACTCATTAAatggcttctttttttcttttgaaggtGGCACACACATCAAAGACTCACATTCACTTAAGAAACAGAAGTAAAGAAAAAGGCAAGAACCCTTTACACATCAAAGCAAAAGGTTACAAGGTTGCCTGTTAGTGCTTACTGGGCAGTTTAGGGACAAAGCAAAAATCCATTTGTTGCTCTTCTCCCTCCCATCCCAAATGTATCCTTTTTTTAGTGTGAATACAAGCAGGGAACTAGAAGTCTTAACAGTGTTTCTACACTCCTGAACACTCCGTCCGGACCACCGTGGGACACATTTAGCCTAAACGTGAGTGTCACCAGTGACTTCTACAAGGGTTTTCAACATTCGTCTGTCTTCAAACATTTATCTAAAAGCATTCACACTGAAGCTATACATACAGTTGCTCTTTTACAACACCATTACCATTACCATGACCTGACCAAGTTACCAGATTAAAACATACATTATACAAAGATGTTAGTGCTCCAACTGTTTCcttcaatgtatttttttcaagaAGATAAAACcaataaataaactttttttcttctctcttttttttttttttttaaacgccatACTTTTAAAACAAGTGGAAATGATGAAGGTATTTTCAGGATTAGTAATAGGTTTGTGCTTGTCAAGGTCATAAGAAGGCAGATCTGAAATGTTGAACAGTGggctatgtgtgtatattggATTTGGCTcacaaacaatgaaataaaaagccCAGTCTTCCTAAAAGTGGAAGAAATTTCATTTAAAACTCGCCACTCACTGCACATATTGCTTTCTGCACAGGCCTCCAGAGCTTTATGGCATTAGCACAGCCTTCAGATGAGGACTCCCATCCTAAAACGCAGTCAGGTTGGAACCACATGCTAGTCTTCCGTCATGGCGCTCTCTGAATAAGCAAGCAGTTCTCTATTAGTATGCTTCTTTGTCTATTCTTTTTCTTAACATTCGACAATTTTGGTGGCAATGCTTGATTAAAATATTGCTCGTCTGAATCAACAGTTCATGCAAATCCTAGCATGCTGCCCTGTATCCAGTGGTTACACAATGCATTGGCTCTGTGaacaggacaaacacacacacacactcactcacacacacacacacacacacacacacacacacacacacactatgtacacacacatacacacttgccAGAGGAACAACGCTGACGTGGAGGGTGGATGTAGCACTTGTGCAGTTATGCCAGATGACCTCAAAAAAGACGCAGTCCATTAATCCATGACCGCTTTTGTACAGATCTGTGTTGCAGAGTGGATAATCTGGGGCAGAAGAAACTCCACAGTTGCATGTCCCATCGCTTGCAGTCCATAACCTCAGGCTCAACAGAATCTGCATTTAACCATAGCAAGTCACACTTTCACAACAGAATTGGCAAATCTAAAACAAATTACGGGGTAAAACTGTGAAATGATCAATACATTATTGCAGAACATACATTATTAACAAGTCACTTTGCCCAACACCTACAGAAGCATGCATCTATGATGGCCAGGCGTCGCCTCCAAACACAGATGCACATGTCGAAGTATTCCTATTATTTTTCTGCTAATTGCACAAGGCGTCCAGCCTATCATCCTCCAGGCTCCCGACTCAACTCTTCCGATGCAGGACTCCCACTAGTCATGAACACCACAACCAAATCCACTAAGTAAAAATGAAACCCTGTaaacaaaagcagcaaataATGCATTGTTGGGGAAATCTTTGGAATCTGCAACGAGGGGGCAGAGAAAGAACTGGCTGGCGATCCCAGAACTCTGGCTATAGGCTGCGATAGGCAGTGGGTTTCATGAGACTCGGACAATGAAGCACAGCAGAGGTACAACAGGCTCCAGTAAACAATCCTGGATTGCTTATTATTTAGGAAGGGGCAGGAGTGGTGGGTTGGTAAGCTATATCTACTGGAGGACGCAGGTTAGGTGGCAGATGTCCCCAGTTTTGGGACAGACTCTGTCTGGCGTGTGCAAGCTTTCCAGTTCAGCACTCAGAGACAGTTCTCACTCCACCTCCCGGTGTACATCCGAGGCATCGGCTCGGCAGATGGGACAAGTGCGATTGGTCTGGAAGTCAAGCGGAAACGTGAAGACGTTAAGCgcaacatttcaaaaacattcaCACAATCTATGAGGACACTATGACATCATGTTTTGTTCAAACTGGCATCAACTTACTTTTAACCATTTGTCCACACACTTTGCGTGGAATTCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141071 False 3868 lncRNA 0.39 2 15086584 15090581
TU141072 True 3878 lncRNA 0.40 2 15086584 15090581

Neighbor

gene id symbol gene type direction distance location
faf2 faf2 coding upstream 19785 15059021 ~ 15066799 (+)
pin4 pin4 coding upstream 28403 15054385 ~ 15058181 (+)
LOC120567085 NA coding upstream 76494 15007955 ~ 15010090 (+)
LOC120566895 cpeb4,LOC103355681,LOC107086066 coding upstream 96271 14977800 ~ 14990313 (+)
bnip1a bnip1,LOC101483240,LOC102202434,LOC102780069 coding upstream 188754 14891886 ~ 14897830 (+)
cdhr2 NA coding downstream 21356 15111937 ~ 15127433 (+)
lrrtm2 lrrtm2,LOC103471148 coding downstream 399168 15489749 ~ 15495279 (+)
LOC120566311 LOC102208083,LOC100712192,LOC101476853,LOC102798294,LOC102307272 coding downstream 471829 15562410 ~ 15567521 (+)
gpx3 gpx3,LOC103376216 coding downstream 602924 15693505 ~ 15698165 (+)
LOC120566295 LOC104959353,LOC106516008,LOC107086100,LOC108242077 coding downstream 640698 15731279 ~ 15750608 (+)
G105034 NA non-coding upstream 75953 15010341 ~ 15010631 (+)
G104982 LOC108245816 non-coding upstream 240988 14841497 ~ 14845596 (+)
G104939 NA non-coding upstream 350011 14735180 ~ 14736573 (+)
G104898 NA non-coding upstream 483765 14602105 ~ 14602819 (+)
G104872 NA non-coding upstream 501248 14527138 ~ 14585336 (+)
G105085 NA non-coding downstream 42961 15133542 ~ 15134820 (+)
LOC120567003 NA non-coding downstream 60292 15150873 ~ 15153052 (+)
LOC120567004 NA non-coding downstream 110360 15200941 ~ 15204702 (+)
G105112 NA non-coding downstream 273052 15363633 ~ 15363940 (+)
G105114 ctnna1 non-coding downstream 294633 15385214 ~ 15441706 (+)
stc2a stc2 other upstream 116460 14895961 ~ 14970124 (+)
atp6v0e1 atp6v0e1 other upstream 195089 14889235 ~ 14891495 (+)
hspa9 hspa9 other upstream 303918 14767371 ~ 14782666 (+)
rell2 NA other upstream 449160 14618394 ~ 14637424 (+)
LOC120566515 NA other upstream 3052752 12028625 ~ 12033832 (+)
vma21 vma21 other downstream 1406719 16497300 ~ 16505658 (+)
nlgn3a nlgn3 other downstream 1709202 16799783 ~ 16926634 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other downstream 1860431 16951012 ~ 16957410 (+)
G105536 NA other downstream 2035774 17126355 ~ 17127785 (+)
G105542 NA other downstream 2051402 17141983 ~ 17151507 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G17143 NA non-coding NC_048565.1 CM023219.2 18281385 ~ 18282115 (+)
rainbow trout (Oncorhynchus mykiss) G1244990 NA non-coding NC_048578.1 CM023232.3 39314436 ~ 39319213 (-)
striped catfish (Pangasianodon hypophthalmus) G215494 NA non-coding NC_047607.1 CM018553.1 22754560 ~ 22755107 (-)
bowfin (Amia calva) G106874 NA non-coding CM030133.1 CM030133.1 24986838 ~ 24991237 (+)
mexican tetra (Astyanax mexicanus) G14965 NA non-coding NC_035898.1 CM008301.1 31970478 ~ 31976008 (+)