RNA id: TU141071


Basic Information

Item Value
RNA id TU141071
length 3868
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G105066
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15086584 ~ 15090581 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAAAAATGAGGTAACTGTAAATGTGCAAGTACCAAAGCAAAATATCTGCCTAACACAGAACACATGCCCCAGGCTCTGTTGGCGGGTGGGTAGTCTGGTGTTCAGGCAAGGACCCCTAGAGGCCAGGGAGAGTAAGAACAGTAAACCACTATCCCACCACAGCAAAAAGTCATTGGTAAACAATAAATGGCATCTACGGAGCAATCAATCACAAATCCTAAATAAATTTTAGCTGCTTATCGGAACACATTTTTGCACCACACAAGCTGTGAGATTATTCAATAACTCTTAACAGAAAGACTACAAGACTCTATTCTCAGTTGTCATTAAAAGTTACCTCATTACCTAGGCCTTAATGGGaggttcttttttatttaatagggTAGCTGgatattgttaaatattaaCTCCAAAATAAGAGTGCTAACATTAACATGAAGGTATCTATATGTGAACAATATATTTTAAGATATTGATACACAGAGCAAGAGCCTGATATGCAGGTACGATACTACACTGAAATAAGTATGACAACACTTgagtcttttttcattttttttttttttttttttaaatcccttaAACTATATTGATTTTCACGGACATTGTTTTAGGGGTATTAATATAACATGCTTTAAGAATACATGGGATCCATGACAAACTATTGCATTCACGCAAGTGAGTTTTCATACCTAAAAGCAGAACATCTAGCACCTTTTCACTATGGCTTTTGATAAACTACAGTAGTTTCAGAGCATGTCATTTTCAGTCGTTAGGGCAAGAACAGTAACACAATGTATGTAAGAATTTCTGGATTCAagaccaggttttttttttctctctataaAATGAAGTTAGCGCAATAAAATCTTGTAGTCATTCAGTTCTATTACAAATGTGTGCAGTACAATGCATGGCAGTTATCAGCTGAGCATTACGATCCAGACCCCCAGAACCCAAAGCCAACTAGAGCTAAAAATCAGTTGGGATCTGGTTGACAAGCATGCATATTGTGCACCATTAAATAGGTCCCCACCAGATTTTGAGATATCCTCCACTACAACACACTTGTTttacccccttttttttttttctccttttttttttccttttttaaagtcATGCAAAACACCTCTGAAGTAGATTTGGGAGTGAATTAGGTAGGATAGTGTGCCTCATGGCACATTTAGAAATGGGATCACAACCGCTATGTGAAACATATGGTTTGAGTAATATAACAAAAGTCAAACAGGTTTGAATAATACACTTGTAATGAGTTGCAGTGTACATTGCCTTGTTTCAGTGAATATTAATAACGTATTTactcatctttttttcttgcatGCCCGTCTTTAAATGATGTATTATCTACTATTTCCGACAAAACTGAATATTATAATTGATTACATTAAATCATTGGCGGTCTGAGGAAAACAATCACGCTAAATTCAGATATACCCTTTTGATGGCATCCTTTCCATTTGAAATGGACTGTTctcctttatttttatataccAAGAGGCCctgagtgatttttttttttcttttttaaaacttacAATATATGCCAGCGAATAGATATGTACACATAGGTTAATTCTCAAAGCTGTGGGTTTAACTCATTAAatggcttctttttttcttttgaaggtGGCACACACATCAAAGACTCACATTCACTTAAGAAACAGAAGTAAAGAAAAAGGCAAGAACCCTTTACACATCAAAGCAAAAGGTTACAAGGTTGCCTGTTAGTGCTTACTGGGCAGTTTAGGGACAAAGCAAAAATCCATTTGTTGCTCTTCTCCCTCCCATCCCAAATGTATCCTTTTTTTAGTGTGAATACAAGCAGGGAACTAGAAGTCTTAACAGTGTTTCTACACTCCTGAACACTCCGTCCGGACCACCGTGGGACACATTTAGCCTAAACGTGAGTGTCACCAGTGACTTCTACAAGGGTTTTCAACATTCGTCTGTCTTCAAACATTTATCTAAAAGCATTCACACTGAAGCTATACATACAGTTGCTCTTTTACAACACCATTACCATTACCATGACCTGACCAAGTTACCAGATTAAAACATACATTATACAAAGATGTTAGTGCTCCAACTGTTTCcttcaatgtatttttttcaagaAGATAAAACcaataaataaactttttttcttctctcttttttttttttttttaaacgccatACTTTTAAAACAAGTGGAAATGATGAAGGTATTTTCAGGATTAGTAATAGGTTTGTGCTTGTCAAGGTCATAAGAAGGCAGATCTGAAATGTTGAACAGTGggctatgtgtgtatattggATTTGGCTcacaaacaatgaaataaaaagccCAGTCTTCCTAAAAGTGGAAGAAATTTCATTTAAAACTCGCCACTCACTGCACATATTGCTTTCTGCACAGGCCTCCAGAGCTTTATGGCATTAGCACAGCCTTCAGATGAGGACTCCCATCCTAAAACGCAGTCAGGTTGGAACCACATGCTAGTCTTCCGTCATGGCGCTCTCTGAATAAGCAAGCAGTTCTCTATTAGTATGCTTCTTTGTCTATTCTTTTTCTTAACATTCGACAATTTTGGTGGCAATGCTTGATTAAAATATTGCTCGTCTGAATCAACAGTTCATGCAAATCCTAGCATGCTGCCCTGTATCCAGTGGTTACACAATGCATTGGCTCTGTGaacaggacaaacacacacacacactcactcacacacacacacacacacacacacacacactatgtacacacacatacacacttgccAGAGGAACAACGCTGACGTGGAGGGTGGATGTAGCACTTGTGCAGTTATGCCAGATGACCTCAAAAAAGACGCAGTCCATTAATCCATGACCGCTTTTGTACAGATCTGTGTTGCAGAGTGGATAATCTGGGGCAGAAGAAACTCCACAGTTGCATGTCCCATCGCTTGCAGTCCATAACCTCAGGCTCAACAGAATCTGCATTTAACCATAGCAAGTCACACTTTCACAACAGAATTGGCAAATCTAAAACAAATTACGGGGTAAAACTGTGAAATGATCAATACATTATTGCAGAACATACATTATTAACAAGTCACTTTGCCCAACACCTACAGAAGCATGCATCTATGATGGCCAGGCGTCGCCTCCAAACACAGATGCACATGTCGAAGTATTCCTATTATTTTTCTGCTAATTGCACAAGGCGTCCAGCCTATCATCCTCCAGGCTCCCGACTCAACTCTTCCGATGCAGGACTCCCACTAGTCATGAACACCACAACCAAATCCACTAAGTAAAAATGAAACCCTGTaaacaaaagcagcaaataATGCATTGTTGGGGAAATCTTTGGAATCTGCAACGAGGGGGCAGAGAAAGAACTGGCTGGCGATCCCAGAACTCTGGCTATAGGCTGCGATAGGCAGTGGGTTTCATGAGACTCGGACAATGAAGCACAGCAGAGGTACAACAGGCTCCAGTAAACAATCCTGGATTGCTTATTATTTAGGAAGGGGCAGGAGTGGTGGGTTGGTAAGCTATATCTACTGGAGGACGCAGGTTAGGTGGCAGATGTCCCCAGTTTTGGGACAGACTCTGTCTGGCGTGTGCAAGCTTTCCAGTTCAGCACTCAGAGACAGTTCTCACTCCACCTCCCGGTGTACATCCGAGGCATCGGCTCGGCAGATGGGACAAGTGCGATTGGTCTGGAAGTCAAGCGGAAACGTGAAGACGTTAAGCgcaacatttcaaaaacattcaCACAATCTATGAGGACACTATGACATCATGTTTTGTTCAAACTGGCATCAACTTACTTTTAACCATTTGTCCACACACTTTGCGTGGAATTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141032 lncRNA upstream 75953 15010341 ~ 15010631 (+) True G105034
TU140980 lncRNA upstream 116460 14895961 ~ 14970124 (+) False stc2a
TU140972 lncRNA upstream 195101 14889256 ~ 14891483 (+) False atp6v0e1
TU140950 lncRNA upstream 240988 14841497 ~ 14845596 (+) True G104982
TU140887 lncRNA upstream 303918 14782187 ~ 14782666 (+) False hspa9
TU141105 lncRNA downstream 42961 15133542 ~ 15134820 (+) True G105085
XR_005640505.1 lncRNA downstream 60292 15150873 ~ 15153052 (+) True LOC120567003
XR_005640506.1 lncRNA downstream 110360 15200941 ~ 15204702 (+) True LOC120567004
TU141116 lncRNA downstream 113779 15204360 ~ 15204654 (+) False LOC120567004
TU141136 lncRNA downstream 273052 15363633 ~ 15363940 (+) True G105112
XM_039813991.1 mRNA upstream 19785 15059021 ~ 15066799 (+) True faf2
XM_039812574.1 mRNA upstream 28403 15054385 ~ 15058181 (+) True pin4
XM_039813888.1 mRNA upstream 76494 15007955 ~ 15010090 (+) True LOC120567085
XM_039813584.1 mRNA upstream 96271 14977800 ~ 14990313 (+) False LOC120566895
XM_039813317.1 mRNA downstream 21356 15111937 ~ 15127433 (+) True cdhr2
XM_039813318.1 mRNA downstream 21356 15111937 ~ 15127433 (+) False cdhr2
XM_039812895.1 mRNA downstream 399168 15489749 ~ 15495279 (+) True lrrtm2
XM_039812668.1 mRNA downstream 471829 15562410 ~ 15567521 (+) True LOC120566311
XM_039812646.1 mRNA downstream 602924 15693505 ~ 15698165 (+) True gpx3
TU140977 other upstream 119286 14963160 ~ 14967298 (+) False stc2a
XR_005640590.1 other upstream 723027 14363360 ~ 14363557 (+) True LOC120567497
TU140384 other upstream 3246413 11778809 ~ 11840171 (+) False LOC120567273
TU140383 other upstream 3246413 11797127 ~ 11840171 (+) False LOC120567273
TU140125 other upstream 5168269 9917872 ~ 9918315 (+) True G104301
XR_005640376.1 other downstream 1860431 16951012 ~ 16957410 (+) False plp1a
TU141716 other downstream 2035774 17126355 ~ 17127785 (+) True G105536
TU141725 other downstream 2051402 17141983 ~ 17145859 (+) True G105542
TU141805 other downstream 2267348 17357929 ~ 17360261 (+) False LOC120566324
TU141898 other downstream 2592338 17682919 ~ 17685699 (+) True G105677

Expression Profile