stc2a (stc2)


Basic Information

Item Value
gene id stc2a
gene name stc2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 14895961 ~ 14970124 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU140977
TAACTCCTTCATCCAAATTGACACCCGGGGCTCTGAGAAATATAGGCAGCATCCCTTCCAGCTCATGCATTCAGTCCCACAGCTGCCCCAAAAGACACCACGCTGCAGCTGCGCTGATCACTGATCCAAGGcgaaccctctctctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacacacacactcacactctctctcgctctctctctcacacacacacacacacacgtactcacacacacgcgcgcgcgcgcgcgcacacactgCCGGATATTTGCTGGGAATCGGAGCACACTGTCGGAGACGCAATGTTGGTCAAACTGGCCGTGGTGCTGCTGGTTTTGTCAGTGCTGGAGCAAGTGGTGGGATCGGATAATATCGATATCCATGACAGCCTCCCCGAGAAGCCAGCGAGCCAGAAAGGACGCCTCTCCCTGCAGAACACAGCTGAGATCCAGCACTGCCTGGTGAGTGCAGGGGATGTCGGCTGTGGTGTGTTTGAGTGCTTTGAGAATAACTCCTGCGAGATACGAGGGCTACAGGAAATCTGCATGACGTTCCTGCACAACGCTGGCAAATTTGACTCTCAGGGGAAGTCCTTCATCAAGGATGCTCTGAAATGTATGGCGCATGGGCTACGGCACAAGTTCAGCTGTATCAGCAGGAAGTGTGTGTCCATTAAAGAGATGGTGTTTCAGCTCCAGAGAGAGTGCTATATCAAACACAACCTGTGCTCTGCTGCTAAGGAGAATGTGGCCGTCATGGTGGAGATGATCCATTTCCAAGATCTCTTCCCTAAAGGCCCGTACGTGGAGCTGGTGAACATTCTTCTGAGCTGCGGAGAGGAGGTGAAGGAGGCGTTGACACGGAGCGTCCGGCTACAGTGCGAGCAGAACTGGGGGGCTCTGTGCGACAGCCTGAGCCTCTGCTCCTCCCTCGCCCCGTCTCCCGCCGGCTCCGCCGCCGAACACCACC
>TU140980
tttttgtttttttttttttttttttttttattctgttgtgGAAGTTGGGATTCCTGTGACATCCCAGCATGAGACATAAGCTAATCCTATTgagaatgtactgtatgtgtgtaaagtGACAATCTGTTCAGCTCTCTTGTCATTAGGTTTGATATGGCTTTTTGTAATAATGTAGTGGCTTGAATGGCTTTTCTTTATGTGTTCAGAGGAAAATAAAACTAACCATGTTTCCGGTACTGTTAGTGCTCCATCACCATGTTACGTGTTTTTCTCCGTTCAGCACAAGGACTCTGCTTTCACTGTTGAAATTACAGAACATGGTCTAGAAGTTTGTAACCCACCTGTAAGACATTGAGCATATGATCCTATAAATATCTTAACGACTCATGAAGTCAGATGTATCTTGTtatcattaaaatatttttgtctGTATTTTCTACATGTTGCG
>XM_039813866.1
CCTTGGACGTGGATGTCTGCGTCTCTCATTGGTTGTGAAGCCCCAACCGACAACACCTGCTTAACTCCTTCATCCAAATTGACACCCGGGGCTCTGAGAAATATAGGCAGCATCCCTTCCAGCTCATGCATTCAGTCCCACAGCTGCCCCAAAAGACACCACGCTGCAGCTGCGCTGATCACTGATCCAAGGcgaaccctctctctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacacacacactcacactctctctcgctctctctctcacacacacacacacacacgtactcacacacacgcgcgcgcgcgcgcgcacacactgCCGGATATTTGCTGGGAATCGGAGCACACTGTCGGAGACGCAATGTTGGTCAAACTGGCCGTGGTGCTGCTGGTTTTGTCAGTGCTGGAGCAAGTGGTGGGATCGGATAATATCGATATCCATGACAGCCTCCCCGAGAAGCCAGCGAGCCAGAAAGGACGCCTCTCCCTGCAGAACACAGCTGAGATCCAGCACTGCCTGGTGAGTGCAGGGGATGTCGGCTGTGGTGTGTTTGAGTGCTTTGAGAATAACTCCTGCGAGATACGAGGGCTACAGGAAATCTGCATGACGTTCCTGCACAACGCTGGCAAATTTGACTCTCAGGGGAAGTCCTTCATCAAGGATGCTCTGAAATGTATGGCGCATGGGCTACGGCACAAGTTCAGCTGTATCAGCAGGAAGTGTGTGTCCATTAAAGAGATGGTGTTTCAGCTCCAGAGAGAGTGCTATATCAAACACAACCTGTGCTCTGCTGCTAAGGAGAATGTGGCCGTCATGGTGGAGATGATCCATTTCCAAGATCTCTTCCCTAAAGGCCCGTACGTGGAGCTGGTGAACATTCTTCTGAGCTGCGGAGAGGAGGTGAAGGAGGCGTTGACACGGAGCGTCCGGCTACAGTGCGAGCAGAACTGGGGGGCTCTGTGCGACAGCCTGAGCCTCTGCTCCTCCCTCGCCCCGTCTCCCGCCGGCTCCGCCGCCGAACACCACCGCCGCCCGCCGCCCTCCCACCCTGAGCCGGAGCACCCCCGCCCTCCGCGGCAAGGCGACAAGGACAAACCCGCGAAGGCCGGCTTCAACGCTCACCCACGCAGTCGCAGTCAGGGACCCCGGCGCCAGAGCCCAGAGGCCGGAGTCGTGGCTGAGCAGGAAGACCCCGAGGCCACCGGCATCCGGAGGTGAAAGCACAGGAGACTGCCCCGAcctttgacccccccccccccacacaacaTTAAAGAACCACACTTGCAGACTTATGCACACCtccacacaagaacacacacttgccccctcccccccactcacacacacacacacacacaaacacatattccCAGACGGACTGAGCAGAAGGAAACAAGCCCAACTTTTCCTGTCCTTATTCCACCCTCTCTAGTCATTCCAGCAGTCCCACATGGTAAATTTGCAGGGTAATTGTGGTGTAGCTTGTACTGTTATGCCAGACTGTAGgccatgatttaaaaaaaaaaaaattctataataattgttattttcatgattatttCAGCTGTTAGGACTATTTTGGCTCTAATATAGCATTTCTCAAATCATACTTACTGTACGATTTgattatatttgtattatttattttattctgtatGCAATGTTGAAGTATCAAAATGTACATAGAAATATACTtatctatatttatataaacatgTATAAATATAGTTTCAATATGCAATACTGATATGCTATACATGACGTAGTATATGGTGTGCTGTCTGTTCCCTTCACAGTATTGCACCCATCACACATTGGTCTGTAGATATGTAACATACACCATTTTTGTTTCAAAGTGGAGATGTGTATTATAATTATAGATACTTGATCAAATACAAATTGTACAGGTTTCAAGTCCAGTTCTGGCACATATGAATTGTAGTGCATGATGGCCACGAAGCCAACAAACTTGTGCATTCTTAAAGTGAAAATCCACTCTAAAGCGGATGCAAATGTAATACTATGAATATGGACAGTTATTTCACACGTGTATGTATTAATAAGTCTCTCATAAAGCTAGAAATAAGAGAGCCAAGACTGATCTCCGATGTCATCAAGCACTGCTGTCTGGGCAGCAATGAATGGGAGACGAACACGGACTCGTTTTGTTTCACGGGCATGAGTGCAACTCTGACGTGATGCAAAAAGTATCACGTTGCTCTCATTCATTGTTGATCAGAAGCTGTGTCTCAGTGACATTACAGATTCATGTCGCGTTTATAGCTTCAGGAGATGTCATTGTTCTTTTAAGAATCAAACTGGCAAATTGTTATACATTCTCTTTGAGTTGGTTTTCCATCTAACTGTTAGATATCGGTGAACTGCAGCAAAGAGAGGATGTTCAATCGAGACCTTTCACATGTAAAATCACACACATCAAGGTGCCTAAACTTGTAATTGTCCACAGTGACCGCTTCTCTGTGATTTAAGTGAATGGATGATACTGTGTCGTCGGGGGAGATTTAATGTTGAGCTATTTTACGATGATGTTGAGCCACAGAAGTCTTAGATTTTGCACTTTGGATgattttcagtttgtgttggacCGCTGCagttagggaaaaaaaaaaaacgggttaCCAGAGTTACCCTCTAATCAGACCTTACTGGGATATTTCAGTTCACCAACGCTGGTATGGTAAAACCAAGCCTTTTGCTCCTTAGGACCAGATTGAGCCCCATCTTCAGATCAATGTTACCCCTTTTGTTGTGTCCCAGTGGGCAATGAAGAGGCATGACAGAAACCCTTGAGATCTCTGGCCCCTCTAAATTAGCCCTTATTCCTCTCTGGTCCCTTACCTAGGTCAGGAGAGACATGAAGGCCTGTTATTCTACCCGTTAGAGCCACAGGCAACGCAGCAAGTAACCAGGAACTGGGTTAAGTCCACACACGGGGGCTCTGGTGCTGTTATTCTAAATGTTATATTTACTGAGGCCACCAGAGAATTCCTCTGGGCCACAGCCAAGAGCCAGCaacacagagaggcagagaggagtGGAGCAAAATGGAGtgagaaaactttttttttttatgtgaggaTTCACTCCATCTTAACTTCTCCTAGtactcttcttctttctctcctttagGTCACAAACACAGGCTTTTGACCATTTCAGGCCAGTCGCTCGCTTTTAGCGGTGGAAGTGCAGTTTGTGAGCACACTACACCACATGCTGGGGAACGATtggtgcaaaaagaaaaaaacctgcTCAGATTTTGAGGCTcaattaatgtttgttttttttgttttcactttttatttttcctgttGTATTCACAGTGTTTTTCTCCCAATACCAATCATTCAAAGACTATTTTAAGCTCCGAGGGTTTGAATCATCAGCGAGGCttttcaggcttttttttttttattctgttgtgGAAGTTGGGATTCCTGTGACATCCCAGCATGAGACATAAGCTAATCCTATTgagaatgtactgtatgtgtgtaaagtGACAATCTGTTCAGCTCTCTTGTCATTAGGTTTGATATGGCTTTTTGTAATAATGTAGTGGCTTGAATGGCTTTTCTTTATGTGTTCAGAGGAAAATAAAACTAACCATGTTTCCGGTACTGTTAGTGCTCCATCACCATGTTACGTGTTTTTCTCCGTTCAGCACAAGGACTCTGCTTTCACTGTTGAAATTACAGAACATGGTCTAGAAGTTTGTAACCCACCTGTAAGACATTGAGCATATGATCCTATAAATATCTTAACGACTCATGAAGTCAGATGTATCTTGTtatcattaaaatatttttgtctGTA

Function

symbol description
stc2 Enables enzyme binding activity; heme binding activity; and protein homodimerization activity. Involved in negative regulation of gene expression and regulation of hormone biosynthetic process. Located in endoplasmic reticulum and perinuclear region of cytoplasm.

NR:

description
PREDICTED: stanniocalcin-2

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140977 False 1001 TUCP 0.55 4 14963160 14967298
TU140980 False 448 lncRNA 0.35 2 14895961 14970124
XM_039813866.1 True 3872 mRNA 0.46 4 14963099 14970108

Neighbor

gene id symbol gene type direction distance location
rpl26 rpl26l1,rl26,LOC100708525,LOC105024418,LOC107381811,LOC103040128,LOC106521912 coding upstream 7790 14883814 ~ 14888171 (+)
adam19b adam19 coding upstream 84696 14789362 ~ 14811265 (+)
zgc:113425 NA coding upstream 134015 14756244 ~ 14761946 (+)
setd7 setd7 coding upstream 140621 14748836 ~ 14755340 (+)
zgc:154054 NA coding upstream 165388 14703215 ~ 14730573 (+)
LOC120566895 cpeb4,LOC103355681,LOC107086066 coding downstream 7676 14977800 ~ 14990313 (+)
LOC120567085 NA coding downstream 37831 15007955 ~ 15010090 (+)
pin4 pin4 coding downstream 84261 15054385 ~ 15058181 (+)
faf2 faf2 coding downstream 88897 15059021 ~ 15066799 (+)
cdhr2 NA coding downstream 141813 15111937 ~ 15127433 (+)
G104982 LOC108245816 non-coding upstream 50365 14841497 ~ 14845596 (+)
G104939 NA non-coding upstream 159388 14735180 ~ 14736573 (+)
G104898 NA non-coding upstream 293142 14602105 ~ 14602819 (+)
G104872 NA non-coding upstream 310625 14527138 ~ 14585336 (+)
G105034 NA non-coding downstream 40217 15010341 ~ 15010631 (+)
G105066 NA non-coding downstream 116460 15086584 ~ 15090581 (+)
G105085 NA non-coding downstream 163418 15133542 ~ 15134820 (+)
LOC120567003 NA non-coding downstream 180749 15150873 ~ 15153052 (+)
LOC120567004 NA non-coding downstream 230817 15200941 ~ 15204702 (+)
atp6v0e1 atp6v0e1 other upstream 4466 14889235 ~ 14891495 (+)
hspa9 hspa9 other upstream 113295 14767371 ~ 14782666 (+)
rell2 NA other upstream 258537 14618394 ~ 14637424 (+)
LOC120566515 NA other upstream 2862129 12028625 ~ 12033832 (+)
mgarpa mgarp other upstream 2866458 12006515 ~ 12029503 (+)
vma21 vma21 other downstream 1527176 16497300 ~ 16505658 (+)
nlgn3a nlgn3 other downstream 1829659 16799783 ~ 16926634 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other downstream 1980888 16951012 ~ 16957410 (+)
G105536 NA other downstream 2156231 17126355 ~ 17127785 (+)
G105542 NA other downstream 2171859 17141983 ~ 17151507 (+)

Expression


Co-expression Network