G105114 (ctnna1)


Basic Information

Item Value
gene id G105114
gene name ctnna1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15385214 ~ 15441706 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU141139
tacagtaaataaaaaaaaaaaaaaaaaatccatctgtCAGATAATCACCCTGCTATTGTTCACAGATGTCAGACGAGCTAAACAAAGATTCAGCCCCAAGACCAAAGCAGCGGGGGTTTCAAAGCCTCGCTGTACATGAATGCACCACTATGCAGCAGAATACAACGTAGGACTCAAAGACATCCCACAGTTGTTACCtgaagttaataaaaaaaaaaaactctctcccGTTTAACTTTAAAGCTCCAACTCCTGGAGATGCGTTTCTAGTCGTCTATAAAGATTGGGCCCGACATCAAACCTTGATTAGTGTTCGTGCTCAAGGACAAGGAATATAAACAATAAGCAGAGTTTAAAGTCCGTGAAATCCCCTCCTTTCCTTCGCCTACTTCAAATCTGTGGAGAGAAAACGTTATTGATCCCTCAATTTGGACATGTTCTTAGATTGTGGAAGGGTTTGGTCTCATAGTTAATGAAGCTCGTCAGCTTTGGAAGAGTAACGGCCACACGGTCCGCTCCTTGTTTAGCCCGCTGGGTTCTCCCAGACTCTGAGGAGTTGAGGCCTATTTACAAAGTTTGACTGAACTGGTTGAATCGGTGTGCATTTCGTGTAGGATTAAGCACATGGGCCAGTTACGCAGCAACACAGAAGGCTGGGAGGAATACTCTGTCACCTTTGGTTTGCTGCATGATGTGAACATGAAAAATGATACAGAAAATACATGAGATgcttaaattataaaaaaaagaagacgacATTTATCAGTTAATGGGGTACATATCAGTCATTTAGCACTGAAAATAGTGTTCAGGTCAGTTTAAACTTATTTTAACTGTTTATAGTGGCATAACAAAGTATGTATAAAGTTAGAAAAAGGCAGGCACACATGGAAATGTATTGACTTTGGTGCCTTAAGAacgaaaacatttaaaatttacCAGTTAGTCCAGCACATCATAATGAACTAGTTATTGCTCAAGTtaaaagaagaaagacagaTTTTGCATAGTTGATATTTGCAATACAGAAGCTATTTTTGCCATAATCAGACATTGTAGTGGAAAACACCAGCAACCCCCACAGTCTTATTATAAAACTGGTtagaatacaaaataatcaaaagCCTCTTGCAATTAGTTTTCATGTCTATGGAATCCGCTCTTCTTCCTCCAATAAACATAaaagacaaatatatatatatatatatatttttaaatgcattCATCCAGTTGATTTCACTCTAACTGCATTTTCCAGAGAAGAGACAGTTAATGCTACAGACAATCTGAATTTATGGAATAGAAATGAGGCCGTGTAGAAATATAATGGGTCAAACAGACAAGCCGTCTATGCAAAGGTAGAACAAATATGATAAAACCTTTTATTTCTGATAGAATGACAAgctctatctatatatatgtatatttatatctCACTCATTGGTCAATATGTTGTGGTCTCGTGAATCAGACCTAGGGGAGTCTAGATGCTATCCATGGCTTTAAACTCGCTCAGAGCCTGCACAGGGTTGATGTGCTTCTTCTGAGAGGATCTCTTGACCCGGTTGGTCTGGCCGTCAtcctgcttctctctcttcaCCAGAGGCTTCTTCTCAGGCGCTTTCATCCTCCACGAGATAGCTGGCATGTTAAGGGACTccatgtttttgctcttctggTACTTAGTAGACGCAACGTAGGAGGCCTTGACGGTGGACACCACTGTGTTCATCAGGTTCTTTGCAGCCTGAATAAGGGACATGGCGCTGTC

Function

symbol description
ctnna1 Enables actin filament binding activity and cadherin binding activity. Acts upstream of or within tissue homeostasis. Located in adherens junction; cell cortex; and microvillus. Part of catenin complex. Human ortholog(s) of this gene implicated in patterned macular dystrophy 2. Orthologous to human CTNNA1 (catenin alpha 1).

NR:

description
PREDICTED: catenin alpha-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141139 True 1771 lncRNA 0.40 2 15385214 15441706

Neighbor

gene id symbol gene type direction distance location
cdhr2 NA coding upstream 257781 15111937 ~ 15127433 (+)
faf2 faf2 coding upstream 318415 15059021 ~ 15066799 (+)
pin4 pin4 coding upstream 327033 15054385 ~ 15058181 (+)
LOC120567085 NA coding upstream 375124 15007955 ~ 15010090 (+)
LOC120566895 cpeb4,LOC103355681,LOC107086066 coding upstream 394901 14977800 ~ 14990313 (+)
lrrtm2 lrrtm2,LOC103471148 coding downstream 48043 15489749 ~ 15495279 (+)
LOC120566311 LOC102208083,LOC100712192,LOC101476853,LOC102798294,LOC102307272 coding downstream 120704 15562410 ~ 15567521 (+)
gpx3 gpx3,LOC103376216 coding downstream 251799 15693505 ~ 15698165 (+)
LOC120566295 LOC104959353,LOC106516008,LOC107086100,LOC108242077 coding downstream 289573 15731279 ~ 15750608 (+)
LOC120567474 LOC104959352,LOC103376071 coding downstream 309754 15751460 ~ 15754965 (+)
G105112 NA non-coding upstream 21274 15363633 ~ 15363940 (+)
LOC120567004 NA non-coding upstream 180512 15200941 ~ 15204702 (+)
LOC120567003 NA non-coding upstream 232162 15150873 ~ 15153052 (+)
G105085 NA non-coding upstream 250394 15133542 ~ 15134820 (+)
G105066 NA non-coding upstream 294633 15086584 ~ 15090581 (+)
G105197 NA non-coding downstream 342115 15783821 ~ 15787962 (+)
LOC120567331 NA non-coding downstream 369607 15811313 ~ 15812206 (+)
G105213 NA non-coding downstream 408799 15850505 ~ 15854026 (+)
G105210 cltb non-coding downstream 473183 15914889 ~ 15919194 (+)
G105261 NA non-coding downstream 517356 15959062 ~ 15962938 (+)
stc2a stc2 other upstream 415090 14895961 ~ 14970124 (+)
atp6v0e1 atp6v0e1 other upstream 493719 14889235 ~ 14891495 (+)
hspa9 hspa9 other upstream 602548 14767371 ~ 14782666 (+)
rell2 NA other upstream 747790 14618394 ~ 14637424 (+)
LOC120566515 NA other upstream 3351382 12028625 ~ 12033832 (+)
vma21 vma21 other downstream 1055594 16497300 ~ 16505658 (+)
nlgn3a nlgn3 other downstream 1358077 16799783 ~ 16926634 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other downstream 1509306 16951012 ~ 16957410 (+)
G105536 NA other downstream 1684649 17126355 ~ 17127785 (+)
G105542 NA other downstream 1700277 17141983 ~ 17151507 (+)

Expression


Co-expression Network