LOC120566295 (LOC104959353,LOC106516008,LOC107086100,LOC108242077)


Basic Information

Item Value
gene id LOC120566295
gene name LOC104959353,LOC106516008,LOC107086100,LOC108242077
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15731279 ~ 15750608 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812644.1
TCCATTGAGTGGGAGGGTCACGCAGGCCAGTCTTGTATATATCGCAGTAAAAAATCATGTTTCCTTCATCCAAGTCAACAGCACGGATATTTTTGCTTCACTGCGCTGTTTTCACCACACAGTCACCAGTCACTCCTCGTGGGACTGAAGACAAGGCTTCTTTCCTACTCACTTCCTGCCTGCTGAAGTGGATGCCAGGAGGGATTAGGTGATCTGAAATCCCCTGATGGGCGATGAGAAGGCGAAAGCTACCTTTCAAAGAAAGCATGCCGTGCGGTGTGGTGAAGTCCTTTCTGGTGAGCCTGTCTCGGAGGAAGCCCCTGGAGCCAGATGGGGAGCAGTCCACGTTTAACCGATGTCTGACCACTCTGGACCTGGTGGCCCTTGGTGTGGGCAGCACCCTGGGGGCCGGGGTCTACGTCCTCTCCGGAGAGGTGGCCAGAGACACTGCTGGACCCAGCATCATCATCTCCTTCTTCATCGCCGCCATGGCATCCATATTCGCAGGGCTGTGCTATGCAGAGTTTGGCTCGCGGGTTCCCAAAACAGGCTCAGCATACCTCTACAGCTATGTGACTGTTGGAGAGCTGCTGGCTTTTATCACTGGCTGGAATCTATTACTCTCCTACATCATAGGGACATCTAGTGTTGCCCTGGCATGGAGTGGGACATTTGATGACCTTATAGGGGGCCACATATCCAAATACTTAGAGGAACACGCAGCCATGGGCCTCCCTGGCCTGGCACCTTACCCAGATGTCTTTGCTGCTGCTCTCGTCATGATACTGTCAGGTGTGCTGGCATTTGGAGTGAAAGAGTCAACAACAATCAACAAGATCTTCACAGCAGTCAATATCGTGGTGCTGCTGTTTGTGGCCATCTCTGGATTTATCAAGGGGGACATTTCCAACTGGAGAATCAGTGAAGAGGCTCTGATAAATGCCACAGCAGAACTCCAAAACTTGAGCTCTACTGCCAATGTGACAAGTGTGTATGGAGTGGGTGGATTTTTTCCTTATGGCTTAAGCGGAACGGTGGCCGGAGCTGCAACATGTTTCTACGCTTTTGTTGGATTTGACTGCATCGCTACAACAGgtGAGGAGGTGAAGAACCCCCAGAAGGCCATCCCTCTGGGCATTGTGGCTTCACTACTTATCTGTTTCCTGGCCTACTTTGCGGTCTCTGCTGCTCTCACCCTGATGATGCCCTACTACTTGCTCAATAAAAAAAGCCCCCTGCCAGTGGCCTTTGATTACATCGGCTGGGGTCCTGCCAAATATGTTGTGGCTGTGGGATCACTGTGTGCCCTGTCCACCAGCCTGCTGGGTTCAATGTTCCCAATGCCTCGTGTGCTCTTCGCCATGGCAAGAGACGGCCTGCTTTTCCAACCCCTGACCAAAGTCACCTCAAAGGGCAGTCCTGCTATAGCTACAATATCGTCTGGAACTGTGTCAGCCATCATGGCTCTACTGTTTGACCTGGAAGCCTTGGTGGAAATGATGTCCATCGGCACTCTGTTTGCTTACACACTCGTGGCCATATGCATCTTAATACTGAGGTACCAAGAAGGTCCATCTAAAGACACAGACCTACAGAGCAGAGAAACAAACACCAAGTTTGGCTTCCTGAATCCTCCGTCATCTCCCAATTCATCCACCTCAAGAACAGTCACAACAATGACTATAATCACTGTTGCATTTATAGTCGCACTGTGTGTCACCCTGAGTCAAGCCATGGATGCTCTGTCCCGTATGGAAGCATGGAGTCTGGCGGTTGTCTGCATCCTCGCCTTCATTGTGCTGCTCATCACGTTCCTCATCTGGAGGCACCCACAAAACAGCACCAAGGCATCTTTCATGGTGCCCTTACTCCCTGCTCTGCCGTTACTTAGTACGTTCATCAACGTCTACCTAATGGTCCAGTTAGGTGGGGAAACATGGGTGCGATATGCTATTTGGATGCTAGTGGgGTTACTGATCTATTTTGGCTACGGTGTCCGTTACAGTGTTCAGAGGAAGCGTCTCATGGCCAACCAGATACAGATTAAAACCGTCAGCGACAAAGTAGACAAGGACATCGTTAAAGAAGAAAAGTTCTGAGCTCTGCTGGAGCGGAGAGAAATAGATCGAGATGTTACACTGAGGAACTGCAAGTGTGTAACTACTGTTTTACATGCACCGACCGTTGCTTATCTGTTCCTGCGGCGTCAAACATCTGAGAGTGGAACAGGTGCTTAGTGTTGAAATGCAGACAAGTGGGCCGACTTGTTAACTTTATTCCACATTATGATGTAGTTTGTAGTATATCTAAAATATTCCAAATATTCTCAATGCCAACCTCAAACTGATGCCTGACATATTTTATGACCTGTATATGTTGCCTCTATCAATGTCAGAGCTGTGTCCTGGACACCTGTGTTTATAAAGAAAAAAGGCCTAGAGCCTTGTTCATttctattttattacatttaaataacaaCTTTACACTTTTCATATCAATTGTGAAATgtagaaatgtatttaaattttatgcAATTGTAATTATGATTATGAATAACAAGAGAATTGTTTTTTACCTATCAAAATATGGAGTAAGACTGTACAAAAGTACAATGTAGATACAGAAAATCTTGTGAAATGTCACATTTCTTTGCTCTTAGCCTGTTTAAAGTTTCACTTTATTAATTGTTCAAAGTGTATATACGGAAACTGTATGtgttttataattatatattgaaaatgtattcctaaatt
>XM_039812645.1
AATTCCATTGAGTGGGAGGGTCACGCAGGCCAGTCTTGTATATATCGCAGTAAAAAATCATGTTTCCTTCATCCAAGTCAACAGCACGGATATTTTTGCTTCACTGCGCTGTTTTCACCACACAGTCACCAGTCACTCCTCGTGGGACTGAAGACAAGAAGCATGCCGTGCGGTGTGGTGAAGTCCTTTCTGGTGAGCCTGTCTCGGAGGAAGCCCCTGGAGCCAGATGGGGAGCAGTCCACGTTTAACCGATGTCTGACCACTCTGGACCTGGTGGCCCTTGGTGTGGGCAGCACCCTGGGGGCCGGGGTCTACGTCCTCTCCGGAGAGGTGGCCAGAGACACTGCTGGACCCAGCATCATCATCTCCTTCTTCATCGCCGCCATGGCATCCATATTCGCAGGGCTGTGCTATGCAGAGTTTGGCTCGCGGGTTCCCAAAACAGGCTCAGCATACCTCTACAGCTATGTGACTGTTGGAGAGCTGCTGGCTTTTATCACTGGCTGGAATCTATTACTCTCCTACATCATAGGGACATCTAGTGTTGCCCTGGCATGGAGTGGGACATTTGATGACCTTATAGGGGGCCACATATCCAAATACTTAGAGGAACACGCAGCCATGGGCCTCCCTGGCCTGGCACCTTACCCAGATGTCTTTGCTGCTGCTCTCGTCATGATACTGTCAGGTGTGCTGGCATTTGGAGTGAAAGAGTCAACAACAATCAACAAGATCTTCACAGCAGTCAATATCGTGGTGCTGCTGTTTGTGGCCATCTCTGGATTTATCAAGGGGGACATTTCCAACTGGAGAATCAGTGAAGAGGCTCTGATAAATGCCACAGCAGAACTCCAAAACTTGAGCTCTACTGCCAATGTGACAAGTGTGTATGGAGTGGGTGGATTTTTTCCTTATGGCTTAAGCGGAACGGTGGCCGGAGCTGCAACATGTTTCTACGCTTTTGTTGGATTTGACTGCATCGCTACAACAGgtGAGGAGGTGAAGAACCCCCAGAAGGCCATCCCTCTGGGCATTGTGGCTTCACTACTTATCTGTTTCCTGGCCTACTTTGCGGTCTCTGCTGCTCTCACCCTGATGATGCCCTACTACTTGCTCAATAAAAAAAGCCCCCTGCCAGTGGCCTTTGATTACATCGGCTGGGGTCCTGCCAAATATGTTGTGGCTGTGGGATCACTGTGTGCCCTGTCCACCAGCCTGCTGGGTTCAATGTTCCCAATGCCTCGTGTGCTCTTCGCCATGGCAAGAGACGGCCTGCTTTTCCAACCCCTGACCAAAGTCACCTCAAAGGGCAGTCCTGCTATAGCTACAATATCGTCTGGAACTGTGTCAGCCATCATGGCTCTACTGTTTGACCTGGAAGCCTTGGTGGAAATGATGTCCATCGGCACTCTGTTTGCTTACACACTCGTGGCCATATGCATCTTAATACTGAGGTACCAAGAAGGTCCATCTAAAGACACAGACCTACAGAGCAGAGAAACAAACACCAAGTTTGGCTTCCTGAATCCTCCGTCATCTCCCAATTCATCCACCTCAAGAACAGTCACAACAATGACTATAATCACTGTTGCATTTATAGTCGCACTGTGTGTCACCCTGAGTCAAGCCATGGATGCTCTGTCCCGTATGGAAGCATGGAGTCTGGCGGTTGTCTGCATCCTCGCCTTCATTGTGCTGCTCATCACGTTCCTCATCTGGAGGCACCCACAAAACAGCACCAAGGCATCTTTCATGGTGCCCTTACTCCCTGCTCTGCCGTTACTTAGTACGTTCATCAACGTCTACCTAATGGTCCAGTTAGGTGGGGAAACATGGGTGCGATATGCTATTTGGATGCTAGTGGgGTTACTGATCTATTTTGGCTACGGTGTCCGTTACAGTGTTCAGAGGAAGCGTCTCATGGCCAACCAGATACAGATTAAAACCGTCAGCGACAAAGTAGACAAGGACATCGTTAAAGAAGAAAAGTTCTGA

Function

NR:

description
PREDICTED: cationic amino acid transporter 2-like

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K03294 TC.APA; basic amino acid/polyamine antiporter, APA family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812644.1 True 2753 mRNA 0.46 13 15731282 15750608
XM_039812645.1 False 1995 mRNA 0.51 12 15731279 15749954

Neighbor

gene id symbol gene type direction distance location
gpx3 gpx3,LOC103376216 coding upstream 33114 15693505 ~ 15698165 (+)
LOC120566311 LOC102208083,LOC100712192,LOC101476853,LOC102798294,LOC102307272 coding upstream 163758 15562410 ~ 15567521 (+)
lrrtm2 lrrtm2,LOC103471148 coding upstream 236000 15489749 ~ 15495279 (+)
cdhr2 NA coding upstream 603846 15111937 ~ 15127433 (+)
faf2 faf2 coding upstream 664480 15059021 ~ 15066799 (+)
LOC120567474 LOC104959352,LOC103376071 coding downstream 852 15751460 ~ 15754965 (+)
n4bp3 n4bp3,LOC102793510 coding downstream 5842 15756450 ~ 15782673 (+)
si:ch73-43g23.1 NA coding downstream 43984 15794592 ~ 15804718 (+)
rufy1 rufy1,LOC103365700 coding downstream 105836 15856444 ~ 15866053 (+)
ankhd1 LOC103365697 coding downstream 126239 15876847 ~ 15906138 (+)
G105114 ctnna1 non-coding upstream 289573 15385214 ~ 15441706 (+)
G105112 NA non-coding upstream 367339 15363633 ~ 15363940 (+)
LOC120567004 NA non-coding upstream 526577 15200941 ~ 15204702 (+)
LOC120567003 NA non-coding upstream 578227 15150873 ~ 15153052 (+)
G105085 NA non-coding upstream 596459 15133542 ~ 15134820 (+)
G105197 NA non-coding downstream 33213 15783821 ~ 15787962 (+)
LOC120567331 NA non-coding downstream 60705 15811313 ~ 15812206 (+)
G105213 NA non-coding downstream 99897 15850505 ~ 15854026 (+)
G105210 cltb non-coding downstream 164281 15914889 ~ 15919194 (+)
G105261 NA non-coding downstream 208454 15959062 ~ 15962938 (+)
stc2a stc2 other upstream 761155 14895961 ~ 14970124 (+)
atp6v0e1 atp6v0e1 other upstream 839784 14889235 ~ 14891495 (+)
hspa9 hspa9 other upstream 948613 14767371 ~ 14782666 (+)
rell2 NA other upstream 1093855 14618394 ~ 14637424 (+)
LOC120566515 NA other upstream 3697447 12028625 ~ 12033832 (+)
vma21 vma21 other downstream 746692 16497300 ~ 16505658 (+)
nlgn3a nlgn3 other downstream 1049175 16799783 ~ 16926634 (+)
plp1a plp1,LOC101171500,LOC105925114,LOC101482362,LOC103471165,LOC103135636,LOC103135639,LOC104923184,LOC102202602,LOC108242072 other downstream 1200404 16951012 ~ 16957410 (+)
G105536 NA other downstream 1375747 17126355 ~ 17127785 (+)
G105542 NA other downstream 1391375 17141983 ~ 17151507 (+)

Expression


Co-expression Network