G105743 (LOC102790791,LOC101467139)


Basic Information

Item Value
gene id G105743
gene name LOC102790791,LOC101467139
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17857110 ~ 17859633 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU141996
TTtcacataaatatttttcatcTTTATTGGTGAAAGATACAGAGTTTGAATTAATAACAGAGGGGAGCTTTCAGAAAGGTGGCAGGAGTTCATTCGTCATTCTCAAAGTCAGCTGCAATCTTCCTCTTGCCCTGCTGATGGACGTTGTTTCCCCAGGTGTATGTCAGGTACATGAGAGTCATTGGGGGGCAACCTTTAAAGAAAGAGGATGTGACCCGTCTCCACACATTGGGGATTCCCTTGGAGAAGTAGTTGGGGAAAGCCCTCTGCTCAAAGGGGGACAGACTGTATGTGATTACATGCCTGATCTTGGCCAAGTCTCCGAAGTGGCGGCCCATGTTTACCAGAGAGCTG
>TU141997
TTtcacataaatatttttcatcTTTATTGGTGAAAGATACAGAGTTTGAATTAATAACAGAGGGGAGCTTTCAGAAAGGTGGCAGGAGTTCATTCGTCATTCTCAAAGTCAGCTGCAATCTTCCTCTTGCCCTGCTGATGGACGTTGTTTCCCCAGGTGTATGTCAGGTACATGAGAGTCATTGCTTAAAGAAAGAGGATGTGACCCGTCTCCACACATTGGGGATTCCCTTGGAGAAGTAGTTGGGGAAAGCCCTCTGCTCAAAGGGGGACAGACTGTATGTGATTACATGCCTGATCTTGGCCAAGTCTCCGAAGTGGCGGCCCATGTTTACCAGAGAGCTG
>TU141999
TTtcacataaatatttttcatcTTTATTGGTGAAAGATACAGAGTTTGAATTAATAACAGAGGGGAGCTTTCAGAAAGGTGGCAGGAGTTCATTCGTCATTCTCAAAGTCAGCTGCAATCTTCCTCTTGCCCTGCTGATGGACGTTGTTTCCCCAGGTGTATGTCAGGTACATGAGAGTCATTGGGGGGGCAACCTTTAAAGAAAGAGGATGTGACCCGTCTCCACACATTGGGGATTCCCTTGGAGAAGTAGTTGGGGAAAGCCCTCTGCTCAAAGGGGGACAGACTGTATGTGATTACATGCCTGATCTTGGCCAAGTCTCCGAAGTGGCGGCCCATGTTTACCAGAGAGCGTACTGTTTGGCTGTTTCTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141996 False 354 lncRNA 0.47 2 17857110 17858581
TU141997 False 344 lncRNA 0.46 2 17857110 17858581
TU141999 True 375 lncRNA 0.47 3 17857110 17859633

Neighbor

gene id symbol gene type direction distance location
fgf1a LOC102791635,LOC100693787,LOC101468745 coding upstream 21947 17831893 ~ 17835163 (+)
nr3c1 LOC103359143 coding upstream 27599 17798656 ~ 17829511 (+)
fgf16 fgf16 coding upstream 180314 17670197 ~ 17676796 (+)
uprt uprt coding upstream 233566 17618542 ~ 17623544 (+)
LOC120566523 LOC108240568,LOC103359160,LOC106514372 coding upstream 352838 17500411 ~ 17504272 (+)
LOC120567299 sept8 coding downstream 4811 17864444 ~ 17881876 (+)
ccng1 ccng1 coding downstream 22850 17882483 ~ 17887495 (+)
gabrb2a gabrb2,LOC102788768 coding downstream 40338 17899971 ~ 17933474 (+)
atp10b atp10b,LOC104956132 coding downstream 80667 17940300 ~ 17958880 (+)
atp7a atp7a coding downstream 110255 17969888 ~ 17987028 (+)
G105735 NA non-coding upstream 13736 17834719 ~ 17843374 (+)
LOC120566776 NA non-coding upstream 16158 17839902 ~ 17840952 (+)
G105688 NA non-coding upstream 147941 17705876 ~ 17709169 (+)
G105685 NA non-coding upstream 157383 17697763 ~ 17699727 (+)
G105676 atrx,LOC102794659 non-coding upstream 174479 17679699 ~ 17682631 (+)
G105791 NA non-coding downstream 109117 17968750 ~ 17968955 (+)
LOC120567419 NA non-coding downstream 131985 17991618 ~ 17994385 (+)
G105798 NA non-coding downstream 141802 18001435 ~ 18001780 (+)
G105843 NA non-coding downstream 199393 18059026 ~ 18059681 (+)
G105845 NA non-coding downstream 206817 18066450 ~ 18068403 (+)
G105677 NA other upstream 171411 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 392888 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 496848 17357508 ~ 17360262 (+)
G105542 NA other upstream 705603 17141983 ~ 17151507 (+)
G105536 NA other upstream 729325 17126355 ~ 17127785 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other downstream 30537 17890170 ~ 17899731 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other downstream 1104301 18963934 ~ 18969946 (+)
G106237 spock1 other downstream 1745207 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 2169230 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 2492088 20351721 ~ 20352167 (+)

Expression


Co-expression Network