G106218


Basic Information

Item Value
gene id G106218
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19515958 ~ 19602093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU142662
AACACTTGTAACATACTGCTAACTCTCGCAGATGCAGCTTCACTGAAAGGAAAACTGGAAGTCGGGCCCAGAATTCATGCAAGGTAAGCATTAAGGTGGATACAATGCAGGAAAAATGCAGCAGACTGCATGTGATGAAAGATGAACGAATGAGACATTTTCTTGACAGCTTTTGTCATGTAGCCTGATGACAGAAGACGCTGCACTAGCCAAGCTCCCAGAATTGGGTGATTGTACCCTGCACAGCTTCTGGCATAATTTGATGCACAGTTAAGCCCATTGTCTATTGTATCTGACAGACTGTGTTGTGAACTGCTGAATAGGCTGTTTCAAGCCAGAAGATTCAGTCGTGTTTTAGCCTCCGAATGTTGGtacaatgtgtttttaaagtgcCGAGTGGGCTCTTTCAAGGCAGTGGGGTCAGCTGTCCCATTAGCCAGCGATATTACAATAACACTCATTAAGCTTTTATGTTCTTTTGGGCACTGCATGGCCTTGTGATTCTCCTCTCTCCAAGGcaagtgatttcttttttttgctgttacCATTTATGTCTGTTTCCAACAGGAGAGGCTGCTTTCTCAAGGTTGGAAAGGTCAGAATTGATGGAGGGCTTTGATTGTTCTACTGCAGAGAAGCCTGCGCTtcagagaaaataaaaccaaaaagcaTGTGAAACTCATATAAATGGGTTTGTGGTTTCACAGTGAggaaagagatgtgtttttatttcatcatgATTCGGTAAAATAAGATGAAATGCGATCGAGGCTTGTGCCAAAAATGGTATAGCAGGAGAACAAGAGACACATGGACACAGACCTATAAGGTTCAAAAGACACCCAAAGTGCCACTTTACTTAAATTTTCAAAGTTACAAATAAAAATTCACTTAGTTGACATGGTGAGGATTTCAATTTTAAATCACGAACATATCCAGTGTTGGGAGGCAGAACAGAGCCTCTTCTCTGCTCGCCCGACTTCATGTGTCCTCCCAGCTCAGGAGCAGCTTCTTCCTCTAGTGTCTATGCACAGTCAAACAGCCTCAGAAGCCCTACTGATCAACTAGTACAAGAATAGCTGGCTGAAATGCCACAGATTTGGACTGTAGGCCTTGCAGTTCACTTTTCTACACTGCTATCGCTCTGCAATGCAACTTCCTACCTCCTGAGATTGGGAGAAGAACCAAAAAGACACTAGACAGCATCAACATAGCAACAAAGTATTGTAGCAGCCAAATAGGCATCACTTTCTGTTTGAGATGCATAGAGCTAGACCTGGCCAGGTTAATCTCTCTTTTACAGAAACACGATGAGAAACATGCAACAACGACGACAATACATCATTAATCTCATTGCTTCCTGGGCTTTCTGGGACATTCAAGATCAACGGTTAAATAATTTACAATCCTTCATGaaataacagagagagagagagagagagagatagagagagagagagagagagagagagagagagagagagagagagagatctcagAGCCTGGGAACGTGTTGTGGAAACACCTTTGAACACTGGAAGGAGCCTGACGGTAGAACACAGAACATGAGATTGCAACCGCTGAAGTACAGGGAGGGTTTAATCCACAATCTGGCCTTCCTGAAGGAAACATATTTACATCCAATACATCAGCTAATGTATCTGGGCTCACAGACTAACCAGAGGCTCTGACATGGACATACAGAGAtagcagagagagggacaggatataagagaaaggggagatagaGGAGTAATAGAGAAAATAGAGAAGCATGTCCGTGTTAGAAGAGGGTAAAGATTGCAGGTTTGGGGGAAGGTAGAGGCAGAAAGTGGACAGCTTGAGCAGAATTCAGGATCTTGACAGTTGTTGAAATCTAATAGGTTCTGTGTTTTCCATCTGAGGAAAAAGTGAAACACATGAAGAGGATGAGGTTCGGATGAGGTTCACTGAAGAGAGAGATATGGATAAGGGACAGGGAAAAACAGAGCAAGTTCAGGAGCCAAAAGATGGACTGCTTCCAAAGTAAGTGGAGGAGGAGACATTGGAATGGCTTCAGATCTGTGCTGAGTTAACGGAGTTTCCTGGTCGGCTGATGGCAGAATTAAATGGAGCGGAGCTACCACACGTAGCCAGTCTCGTCGTCCTTATCGTCTTCCTCGTCCTCATCGTCCTCGATGGCTCCTCGGGGGTGAATCCGGCCCCGTCTCTTCTTCTGCCGGCTCCGCCCGTTCTGTGAGGGCTCCTCCTCCTGGTCGTCAAGGAGAATGACGGCGCCGCCACTGCCAAAGTCCCCTGATGTCTCCTGGTCCTCATCGCAGTTAGGGTTGCCTTGTTTTCTGGAGCCAGCGATCTCGTTGCCATATTTGTCCACACACCAACACTGGCCGGTGCTGCTGTGACACTGGGTTGGTTTGAAGTAGCCCTCCTCGGTACAACGGGGAATATAAAAGCCTATGAGGCTCTTCCTTCGACTCTGGTTCTGGATCCTGCTCTTCT
>TU142663
tgagagtgagagagagagagagagagagagagaagatctcagAGCCTGGGAACGTGTTGTGGAAACACCTTTGAACACTGGAAGGAGCCTGACGGTAGAACACAGAACATGAGATTGCAACCGCTGAAGTACAGGGAGGGTTTAATCCACAATCTGGCCTTCCTGAAGGAAACATATTTACATCCAATACATCAGCTAATGTATCTGGGCTCACAGACTAACCAGAGGCTCTGACATGGACATACAGAGAtagcagagagagggacaggatataagagaaaggggagatagaGGAGTAATAGAGAAAATAGAGAAGCATGTCCGTGTTAGAAGAGGGTAAAGATTGCAGGTTTGGGGGAAGGTAGAGGCAGAAAGTGGACAGCTTGAGCAGAATTCAGGATCTTGACAGTTGTTGAAATCTAATAGGTTCTGTGTTTTCCATCTGAGGAAAAAGTGAAACACATGAAGAGGATGAGGTTCGGATGAGGTTCACTGAAGAGAGAGATATGGATAAGGGACAGGGAAAAACAGAGCAAGTTCAGGAGCCAAAAGATGGACTGCTTCCAAAGTAAGTGGAGGAGGAGACATTGGAATGGCTTCAGATCTGTGCTGAGTTAACGGAGTTTCCTGGTCGGCTGATGGCAGAATTAAATGGAGCGGAGCTACCACACGTAGCCAGTCTCGTCGTCCTTATCGTCTTCCTCGTCCTCATCGTCCTCGATGGCTCCTCGGGGGTGAATCCGGCCCCGTCTCTTCTTCTGCCGGCTCCGCCCGTTCTGTGAGGGCTCCTCCTCCTGGTCGTCAAGGAGAATGACGGCGCCGCCACTGCCAAAGTCCCCTGATGTCTCCTGGTCCTCATCGCAGTTAGGGTTGCCTTGTTTTCTGGAGCCAGCGATCTCGTTGCCATATTTGTCCACACACCAACACTGGCCGGTGCTGCTGTGACACTGGGTTGGTTTGAAGTAGCCCTCCTCGGTACAACGGGGAATATAAAAGCCTATGAGGCTCTTCCTTCGACTCTGGTTCTGGATCCTGCTCTTCT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030902 hindbrain development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142662 True 2499 lncRNA 0.46 3 19597536 19602093
TU142663 False 1042 lncRNA 0.50 4 19515958 19602093

Neighbor

gene id symbol gene type direction distance location
LOC120566454 chrna9,LOC103365636,LOC102230700 coding upstream 11617 19498950 ~ 19504341 (+)
ube2ka ube2kb,ube2k,LOC100708886,LOC107088242,LOC102229303,LOC103135484,LOC108261162,LOC101072344 coding upstream 18996 19490751 ~ 19496962 (+)
klb klb coding upstream 26166 19483540 ~ 19489792 (+)
ints10 ints10 coding upstream 38191 19469593 ~ 19477767 (+)
frmpd1b LOC104951712,LOC103365642 coding upstream 52462 19438819 ~ 19463496 (+)
etf1a etf1,LOC108430956 coding downstream 330754 19932847 ~ 19940845 (+)
fbxw11a fbxw11 coding downstream 340316 19942409 ~ 19963248 (+)
si:ch73-233f7.1 LOC103359310,LOC104951883,LOC102312450 coding downstream 413115 20015208 ~ 20022263 (+)
LOC120566322 NA coding downstream 432300 20034393 ~ 20040380 (+)
LOC120566529 LOC103375284,LOC102199591,LOC108242356,LOC106933149,LOC106516975 coding downstream 462893 20064986 ~ 20067565 (+)
G106199 NA non-coding upstream 99183 19416347 ~ 19416775 (+)
G106183 aldob,LOC104946054 non-coding upstream 178387 19331708 ~ 19337571 (+)
LOC120566719 NA non-coding upstream 220878 19294298 ~ 19295080 (+)
G106149 NA non-coding upstream 234708 19220073 ~ 19281250 (+)
LOC120566488 NA non-coding downstream 242746 19844839 ~ 19848278 (+)
G106351 NA non-coding downstream 338845 19940938 ~ 19941715 (+)
LOC120566743 NA non-coding downstream 348664 19950757 ~ 19954963 (+)
LOC120567444 NA non-coding downstream 371692 19973785 ~ 19998801 (+)
LOC120567249 NA non-coding downstream 671740 20273833 ~ 20275911 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 546012 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 1616227 17890170 ~ 17899731 (+)
G105677 NA other upstream 1830259 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 2051736 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 2155696 17357508 ~ 17360262 (+)
G106237 spock1 other downstream 2747 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 426770 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 749628 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 1332636 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1677594 21279687 ~ 21283229 (+)

Expression


Co-expression Network